Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Gm27275-201ENSMUST00000184318 272 ntBASIC19.9■□□□□ 0.78
Usp49Q6P9L4 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp49Q6P9L4 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp49Q6P9L4 Pmpcb-201ENSMUST00000030882 1615 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp49Q6P9L4 Gm26885-201ENSMUST00000181920 1688 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Usp49Q6P9L4 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp49Q6P9L4 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp49Q6P9L4 Pdxdc1-202ENSMUST00000115802 2466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Usp49Q6P9L4 Pi4k2b-201ENSMUST00000031081 3139 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
Usp49Q6P9L4 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Gm12669-201ENSMUST00000122162 1009 ntBASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Gm42417-201ENSMUST00000191849 2256 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Ddx19a-201ENSMUST00000040416 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Misp-205ENSMUST00000219305 2569 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Usp49Q6P9L4 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Serinc2-201ENSMUST00000105996 1878 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Bean1-203ENSMUST00000167633 3275 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Gm20049-201ENSMUST00000219950 730 ntBASIC19.88■□□□□ 0.77
Usp49Q6P9L4 AC163280.1-201ENSMUST00000228194 1100 ntBASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Gm13032-201ENSMUST00000151848 2001 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Polr3d-201ENSMUST00000000793 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Usp49Q6P9L4 Gm10654-201ENSMUST00000098653 1633 ntBASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Gm12527-201ENSMUST00000117967 564 ntBASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Sec1-201ENSMUST00000040636 2470 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Tcf7l2-203ENSMUST00000111646 2839 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Kat14-208ENSMUST00000147747 3299 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Vps4a-201ENSMUST00000034388 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 Apba3-201ENSMUST00000057798 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Usp49Q6P9L4 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Gm12441-201ENSMUST00000121806 588 ntBASIC19.86■□□□□ 0.77
Usp49Q6P9L4 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Grk6-201ENSMUST00000001115 2994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Usp49Q6P9L4 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Tmem126a-201ENSMUST00000032844 799 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Ola1-201ENSMUST00000028517 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Gpat3-203ENSMUST00000112887 3059 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Shc3-201ENSMUST00000021898 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Prpsap1-201ENSMUST00000106391 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC19.85■□□□□ 0.77
Usp49Q6P9L4 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Alkbh1-212ENSMUST00000185301 408 ntBASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
Usp49Q6P9L4 Mroh5-201ENSMUST00000071419 2766 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 11.3 ms