Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Naf1-201ENSMUST00000118009 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
Sh3rf1Q69ZI1 Ddx41-204ENSMUST00000224765 2199 ntBASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Ndufv1-202ENSMUST00000128787 1436 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Ndufv1-207ENSMUST00000134479 1438 ntTSL 5 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Fam46c-201ENSMUST00000061455 5640 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Svbp-203ENSMUST00000106345 684 ntTSL 2 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Adrb2-201ENSMUST00000053640 2143 ntAPPRIS P1 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Nr1d2-201ENSMUST00000090543 4663 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
Sh3rf1Q69ZI1 Fxr1-201ENSMUST00000001620 2459 ntTSL 5 BASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Fbxl3-201ENSMUST00000022720 4309 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Gm43338-201ENSMUST00000198617 2223 ntBASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Gm13168-201ENSMUST00000121771 632 ntBASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Gm37805-201ENSMUST00000192612 1094 ntBASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Gm44672-201ENSMUST00000206944 1098 ntBASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 AC135637.1-201ENSMUST00000227750 365 ntBASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 AC122769.4-201ENSMUST00000228166 901 ntBASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
Sh3rf1Q69ZI1 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 5730522E02Rik-201ENSMUST00000109511 1162 ntAPPRIS P5 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 2900042K21Rik-201ENSMUST00000194444 653 ntBASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Gng10-201ENSMUST00000041160 1192 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC17.96■□□□□ 0.47
Sh3rf1Q69ZI1 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Gm26676-201ENSMUST00000181877 2226 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Rpl26-202ENSMUST00000101014 657 ntAPPRIS ALT1 TSL 5 BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Rpl21-203ENSMUST00000099272 1067 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Sh3rf1Q69ZI1 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Acsl3-205ENSMUST00000142704 2976 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Gnas-208ENSMUST00000109087 1716 ntAPPRIS P4 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Yipf2-202ENSMUST00000078572 1894 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Sh3rf1Q69ZI1 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Sh3rf1Q69ZI1 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 31.1 ms