Protein–RNA interactions for Protein: Q62158

Trim27, Zinc finger protein RFP, mousemouse

Predictions only

Length 513 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim27Q62158 Agfg1-205ENSMUST00000187899 2078 ntTSL 5 BASIC21.85■■□□□ 1.09
Trim27Q62158 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim27Q62158 Gm13158-201ENSMUST00000122007 736 ntBASIC21.85■■□□□ 1.09
Trim27Q62158 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
Trim27Q62158 Smim10l1-204ENSMUST00000191462 574 ntTSL 3 BASIC21.85■■□□□ 1.09
Trim27Q62158 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim27Q62158 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim27Q62158 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
Trim27Q62158 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
Trim27Q62158 Mir8112-201ENSMUST00000184382 131 ntBASIC21.84■■□□□ 1.09
Trim27Q62158 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC21.84■■□□□ 1.09
Trim27Q62158 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC21.84■■□□□ 1.09
Trim27Q62158 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim27Q62158 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim27Q62158 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
Trim27Q62158 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim27Q62158 Eif4enif1-203ENSMUST00000110049 3614 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim27Q62158 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim27Q62158 Rbm39-202ENSMUST00000109584 667 ntTSL 5 BASIC21.83■■□□□ 1.09
Trim27Q62158 Trmt13-210ENSMUST00000198454 880 ntBASIC21.83■■□□□ 1.09
Trim27Q62158 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC21.83■■□□□ 1.09
Trim27Q62158 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC21.83■■□□□ 1.09
Trim27Q62158 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim27Q62158 Sqstm1-201ENSMUST00000015981 2673 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
Trim27Q62158 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC21.83■■□□□ 1.09
Trim27Q62158 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim27Q62158 Cep57-208ENSMUST00000147115 2262 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
Trim27Q62158 Tlk2-201ENSMUST00000015107 3212 ntAPPRIS P3 TSL 5 BASIC21.83■■□□□ 1.08
Trim27Q62158 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Pced1a-202ENSMUST00000110277 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC21.82■■□□□ 1.08
Trim27Q62158 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 4930554G22Rik-201ENSMUST00000196102 686 ntBASIC21.82■■□□□ 1.08
Trim27Q62158 Tmem14c-201ENSMUST00000021790 914 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Pea15a-201ENSMUST00000013842 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
Trim27Q62158 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC21.82■■□□□ 1.08
Trim27Q62158 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC21.81■■□□□ 1.08
Trim27Q62158 Racgap1-213ENSMUST00000171702 3052 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim27Q62158 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
Trim27Q62158 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim27Q62158 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim27Q62158 Tmem198-201ENSMUST00000050899 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim27Q62158 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trim27Q62158 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC21.81■■□□□ 1.08
Trim27Q62158 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim27Q62158 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
Trim27Q62158 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
Trim27Q62158 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Trim27Q62158 A730089K16Rik-201ENSMUST00000194526 2427 ntBASIC21.8■■□□□ 1.08
Trim27Q62158 Podxl2-201ENSMUST00000038409 1994 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim27Q62158 Hmbox1-203ENSMUST00000175744 1771 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
Trim27Q62158 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim27Q62158 Gm10418-201ENSMUST00000100943 576 ntBASIC21.8■■□□□ 1.08
Trim27Q62158 Tpm1-204ENSMUST00000113684 887 ntTSL 5 BASIC21.8■■□□□ 1.08
Trim27Q62158 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC21.8■■□□□ 1.08
Trim27Q62158 Gm10653-202ENSMUST00000139570 835 ntBASIC21.8■■□□□ 1.08
Trim27Q62158 Spata3-208ENSMUST00000149469 1110 ntTSL 5 BASIC21.8■■□□□ 1.08
Trim27Q62158 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim27Q62158 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim27Q62158 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Trim27Q62158 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC21.8■■□□□ 1.08
Trim27Q62158 Gas2-201ENSMUST00000051912 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Trim27Q62158 Cacul1-203ENSMUST00000166712 5700 ntAPPRIS ALT2 TSL 5 BASIC21.79■■□□□ 1.08
Trim27Q62158 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim27Q62158 Nanp-201ENSMUST00000066640 1394 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim27Q62158 Slc35g1-201ENSMUST00000054098 3471 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim27Q62158 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC21.79■■□□□ 1.08
Trim27Q62158 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Trim27Q62158 Gm44878-201ENSMUST00000205812 1295 ntBASIC21.79■■□□□ 1.08
Trim27Q62158 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
Trim27Q62158 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Trim27Q62158 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim27Q62158 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC21.78■■□□□ 1.08
Trim27Q62158 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
Trim27Q62158 Zdhhc16-201ENSMUST00000026154 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim27Q62158 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim27Q62158 Nos1ap-207ENSMUST00000161966 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim27Q62158 AC135637.1-201ENSMUST00000227750 365 ntBASIC21.78■■□□□ 1.08
Trim27Q62158 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim27Q62158 Hpn-209ENSMUST00000168884 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim27Q62158 Igsf23-201ENSMUST00000043440 1908 ntAPPRIS P2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Trim27Q62158 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Gm42900-201ENSMUST00000197184 2167 ntBASIC21.77■■□□□ 1.08
Trim27Q62158 Ndor1-202ENSMUST00000114349 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Gm11643-201ENSMUST00000119578 864 ntBASIC21.77■■□□□ 1.08
Trim27Q62158 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Gm18025-201ENSMUST00000221733 862 ntBASIC21.77■■□□□ 1.08
Trim27Q62158 Thap3-201ENSMUST00000036680 1124 ntAPPRIS P3 TSL 1 (best) BASIC21.77■■□□□ 1.08
Trim27Q62158 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Retrieved 100 of 76,532 protein–RNA pairs in 19.5 ms