Protein–RNA interactions for Protein: Q5R1F6

Trav5d-4, T cell receptor alpha variable 5D-4 (Fragment), mousemouse

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav5d-4Q5R1F6 Tpra1-223ENSMUST00000204765 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Col15a1-201ENSMUST00000082303 5102 ntAPPRIS ALT2 TSL 2 BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Ust-201ENSMUST00000061601 4228 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Gapvd1-203ENSMUST00000113099 5758 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Zfp697-202ENSMUST00000178372 4703 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Nudcd2-201ENSMUST00000020578 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Trav5d-4Q5R1F6 Panx2-203ENSMUST00000162424 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Usp13-202ENSMUST00000108228 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Pmepa1-201ENSMUST00000036248 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Arih1-207ENSMUST00000171975 6971 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Gm12933-201ENSMUST00000120203 872 ntBASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Gm44549-201ENSMUST00000208351 577 ntBASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Xxylt1-201ENSMUST00000055389 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Trav5d-4Q5R1F6 Bend4-204ENSMUST00000201972 8268 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.03
Trav5d-4Q5R1F6 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav5d-4Q5R1F6 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav5d-4Q5R1F6 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav5d-4Q5R1F6 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC15.27■□□□□ 0.03
Trav5d-4Q5R1F6 Pon1-201ENSMUST00000002663 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav5d-4Q5R1F6 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Trav5d-4Q5R1F6 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Map3k7-202ENSMUST00000080933 5669 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Arhgef17-204ENSMUST00000209041 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Dnajc19-204ENSMUST00000120805 551 ntTSL 2 BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Rab3c-203ENSMUST00000224180 967 ntBASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Selenom-201ENSMUST00000094469 707 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Gm43702-201ENSMUST00000198772 2546 ntBASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Slc35e1-202ENSMUST00000152080 4383 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Trav5d-4Q5R1F6 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Amfr-201ENSMUST00000053766 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Fcho2-208ENSMUST00000224992 2964 ntBASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Nrros-203ENSMUST00000115165 2389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Agxt-201ENSMUST00000027491 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 2700033N17Rik-201ENSMUST00000140185 721 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Gm5408-201ENSMUST00000197998 747 ntBASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Clstn2-201ENSMUST00000035027 4365 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Hpca-202ENSMUST00000095807 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Ncam2-202ENSMUST00000067602 3563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 A930012L18Rik-201ENSMUST00000181094 2364 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Trav5d-4Q5R1F6 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Mfsd13a-201ENSMUST00000086969 2278 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Stmn4-202ENSMUST00000118426 1281 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 C430049E01Rik-201ENSMUST00000207913 1820 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
Trav5d-4Q5R1F6 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Trav5d-4Q5R1F6 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Trav5d-4Q5R1F6 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms