Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 AC108858.1-201ENSMUST00000228461 1498 ntBASIC19■□□□□ 0.63
Upf3bQ3ULL6 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Gm45141-201ENSMUST00000206502 1888 ntBASIC19■□□□□ 0.63
Upf3bQ3ULL6 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Nrn1-203ENSMUST00000223611 1443 ntBASIC19■□□□□ 0.63
Upf3bQ3ULL6 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Slc35g2-201ENSMUST00000093792 1590 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Gm5643-201ENSMUST00000117081 966 ntBASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Mir6349-201ENSMUST00000184059 97 ntBASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 9330154J02Rik-202ENSMUST00000185960 2557 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.99■□□□□ 0.63
Upf3bQ3ULL6 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Mir2861-201ENSMUST00000175539 82 ntBASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Ndufa6-201ENSMUST00000023085 560 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Abhd13-201ENSMUST00000048216 5074 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
Upf3bQ3ULL6 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Gm45560-201ENSMUST00000211492 1472 ntBASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Smarcd2-201ENSMUST00000021052 2747 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Cklf-203ENSMUST00000211809 525 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Dpf1-202ENSMUST00000065181 1574 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Fam57a-201ENSMUST00000094014 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
Upf3bQ3ULL6 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Ddx39b-203ENSMUST00000173731 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Gm13168-201ENSMUST00000121771 632 ntBASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Gm8520-201ENSMUST00000186517 868 ntBASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Gm5828-201ENSMUST00000071842 1860 ntBASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.96■□□□□ 0.63
Upf3bQ3ULL6 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Tmem192-201ENSMUST00000026595 1122 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
Upf3bQ3ULL6 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
Upf3bQ3ULL6 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.94■□□□□ 0.62
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms