Protein–RNA interactions for Protein: Q3ULJ3

Upf3a, MCG3697, isoform CRA_c, mousemouse

Predictions only

Length 422 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3aQ3ULJ3 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Gm26781-201ENSMUST00000181385 1477 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Upf3aQ3ULJ3 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Upf3aQ3ULJ3 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Tgds-204ENSMUST00000228543 1594 ntBASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Gm7791-201ENSMUST00000219066 539 ntBASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Sirt1-207ENSMUST00000177694 3353 ntTSL 5 BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Ptges3l-202ENSMUST00000103102 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Upf3aQ3ULJ3 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Hoxa6-201ENSMUST00000062829 874 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Lemd3-201ENSMUST00000119093 4370 ntAPPRIS ALT2 TSL 2 BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Upf3aQ3ULJ3 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Upf3aQ3ULJ3 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Upf3aQ3ULJ3 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Gm13474-201ENSMUST00000122466 815 ntBASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Tmie-201ENSMUST00000050958 2802 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Upf3aQ3ULJ3 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Upf3aQ3ULJ3 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Upf3aQ3ULJ3 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Upf3aQ3ULJ3 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Upf3aQ3ULJ3 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
Upf3aQ3ULJ3 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 22.6 ms