Protein–RNA interactions for Protein: P59114

Pcif1, Phosphorylated CTD-interacting factor 1, mousemouse

Predictions only

Length 706 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcif1P59114 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Pcif1P59114 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC19.91■□□□□ 0.78
Pcif1P59114 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcif1P59114 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.9■□□□□ 0.78
Pcif1P59114 Gm11373-201ENSMUST00000129791 2819 ntTSL 5 BASIC19.9■□□□□ 0.78
Pcif1P59114 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
Pcif1P59114 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC19.9■□□□□ 0.78
Pcif1P59114 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Pcif1P59114 AC124581.1-201ENSMUST00000225416 1399 ntBASIC19.9■□□□□ 0.78
Pcif1P59114 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC19.9■□□□□ 0.78
Pcif1P59114 Ppm1j-201ENSMUST00000002298 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Hoxa1-202ENSMUST00000120363 2043 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Pcif1P59114 Camk2b-202ENSMUST00000019133 2223 ntTSL 5 BASIC19.9■□□□□ 0.78
Pcif1P59114 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.78
Pcif1P59114 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC19.89■□□□□ 0.77
Pcif1P59114 Gm6576-201ENSMUST00000169678 883 ntBASIC19.89■□□□□ 0.77
Pcif1P59114 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
Pcif1P59114 Gm26798-201ENSMUST00000181384 2837 ntTSL 5 BASIC19.89■□□□□ 0.77
Pcif1P59114 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC19.89■□□□□ 0.77
Pcif1P59114 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC19.89■□□□□ 0.77
Pcif1P59114 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcif1P59114 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.89■□□□□ 0.77
Pcif1P59114 Grb14-201ENSMUST00000028252 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcif1P59114 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcif1P59114 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcif1P59114 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcif1P59114 Ttc19-201ENSMUST00000050646 3410 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcif1P59114 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcif1P59114 Pigw-201ENSMUST00000067058 2675 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcif1P59114 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
Pcif1P59114 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 Cerkl-205ENSMUST00000143974 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 Ergic3-202ENSMUST00000088650 1349 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
Pcif1P59114 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 1600012H06Rik-202ENSMUST00000164837 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
Pcif1P59114 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcif1P59114 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
Pcif1P59114 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Ctla2a-201ENSMUST00000021880 1373 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Gm11643-201ENSMUST00000119578 864 ntBASIC19.87■□□□□ 0.77
Pcif1P59114 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.87■□□□□ 0.77
Pcif1P59114 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC19.87■□□□□ 0.77
Pcif1P59114 Gm29791-202ENSMUST00000207888 369 ntBASIC19.87■□□□□ 0.77
Pcif1P59114 AC175538.1-201ENSMUST00000225343 1269 ntBASIC19.87■□□□□ 0.77
Pcif1P59114 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC19.87■□□□□ 0.77
Pcif1P59114 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Igsf9b-201ENSMUST00000115247 2857 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Kcns1-201ENSMUST00000045196 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
Pcif1P59114 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
Pcif1P59114 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
Pcif1P59114 Gm13401-201ENSMUST00000117074 291 ntBASIC19.86■□□□□ 0.77
Pcif1P59114 Gm715-201ENSMUST00000117865 831 ntBASIC19.86■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 14.4 ms