Protein–RNA interactions for Protein: P40645

Sox6, Transcription factor SOX-6, mousemouse

Predictions only

Length 827 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox6P40645 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC16.69■□□□□ 0.26
Sox6P40645 Acot1-201ENSMUST00000168120 2272 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sox6P40645 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sox6P40645 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Sox6P40645 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Sox6P40645 Nhs-201ENSMUST00000081569 4881 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sox6P40645 Apbb1-209ENSMUST00000188368 1970 ntTSL 5 BASIC16.69■□□□□ 0.26
Sox6P40645 Bicdl1-203ENSMUST00000118576 1874 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Sox6P40645 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
Sox6P40645 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Sox6P40645 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Sox6P40645 Clasp2-204ENSMUST00000213663 2727 ntTSL 5 BASIC16.69■□□□□ 0.26
Sox6P40645 Gm6598-201ENSMUST00000202719 2615 ntBASIC16.68■□□□□ 0.26
Sox6P40645 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Cacna1h-202ENSMUST00000159048 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Iars2-201ENSMUST00000027921 5471 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Ppme1-201ENSMUST00000032963 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Sox6P40645 Capzb-203ENSMUST00000102507 1702 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC16.68■□□□□ 0.26
Sox6P40645 Sh3glb1-202ENSMUST00000198254 5945 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Sox6P40645 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC16.68■□□□□ 0.26
Sox6P40645 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC16.68■□□□□ 0.26
Sox6P40645 Gm19094-201ENSMUST00000209791 1246 ntBASIC16.68■□□□□ 0.26
Sox6P40645 Ltb-201ENSMUST00000025262 1160 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC16.68■□□□□ 0.26
Sox6P40645 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Znfx1-201ENSMUST00000048988 7218 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Fcho2-208ENSMUST00000224992 2964 ntBASIC16.68■□□□□ 0.26
Sox6P40645 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
Sox6P40645 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Sox6P40645 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Glra1-202ENSMUST00000102716 2390 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Ispd-201ENSMUST00000062041 2690 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC16.67■□□□□ 0.26
Sox6P40645 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Cdk12-203ENSMUST00000107539 5912 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Sox6P40645 Cdca3-201ENSMUST00000024270 1976 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Rcbtb2-226ENSMUST00000171767 2692 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Asnsd1-201ENSMUST00000027264 2442 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Msx2-201ENSMUST00000021922 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Sox6P40645 Lpgat1-202ENSMUST00000110856 2792 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Pcsk5-202ENSMUST00000050715 5783 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Met-203ENSMUST00000115443 6809 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Sox6P40645 Gm15635-204ENSMUST00000208024 2539 ntBASIC16.66■□□□□ 0.26
Sox6P40645 Sigmar1-202ENSMUST00000071561 1547 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 3830408C21Rik-206ENSMUST00000225489 1810 ntBASIC16.66■□□□□ 0.26
Sox6P40645 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Sox6P40645 Adamtsl5-202ENSMUST00000105352 989 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Sox6P40645 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC16.66■□□□□ 0.26
Sox6P40645 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC16.66■□□□□ 0.26
Sox6P40645 Gm36033-202ENSMUST00000214827 745 ntTSL 2 BASIC16.66■□□□□ 0.26
Sox6P40645 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC16.66■□□□□ 0.26
Sox6P40645 AC164629.5-201ENSMUST00000220387 632 ntBASIC16.66■□□□□ 0.26
Sox6P40645 Slc35b2-207ENSMUST00000226086 850 ntBASIC16.66■□□□□ 0.26
Sox6P40645 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
Sox6P40645 Gm29514-202ENSMUST00000186665 2214 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Sox6P40645 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Vangl2-201ENSMUST00000027837 5698 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 AC131586.2-201ENSMUST00000228370 1512 ntBASIC16.65■□□□□ 0.26
Sox6P40645 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Trim68-201ENSMUST00000082175 2388 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Tigd3-201ENSMUST00000055911 2114 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Hps4-201ENSMUST00000035279 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Sox6P40645 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sox6P40645 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox6P40645 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox6P40645 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Sox6P40645 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sox6P40645 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Sox6P40645 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC16.64■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms