Protein–RNA interactions for Protein: O88895

Hdac3, Histone deacetylase 3, mousemouse

Predictions only

Length 424 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hdac3O88895 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hdac3O88895 Klhl35-201ENSMUST00000037359 1954 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
Hdac3O88895 Gm15672-201ENSMUST00000151512 1354 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
Hdac3O88895 Rbm17-201ENSMUST00000040314 1599 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Hdac3O88895 Smurf1-202ENSMUST00000100461 2725 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
Hdac3O88895 A530058N18Rik-208ENSMUST00000131299 1387 ntTSL 2 BASIC21.48■■□□□ 1.03
Hdac3O88895 Efemp2-201ENSMUST00000070118 1781 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Hdac3O88895 Rcan1-202ENSMUST00000060005 2324 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Hdac3O88895 Junos-204ENSMUST00000128094 830 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Hdac3O88895 A430072P03Rik-201ENSMUST00000161480 1510 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
Hdac3O88895 Maz-204ENSMUST00000206254 2282 ntTSL 5 BASIC21.48■■□□□ 1.03
Hdac3O88895 Rbms1-202ENSMUST00000112509 1806 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
Hdac3O88895 5730480H06Rik-201ENSMUST00000030968 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hdac3O88895 Dedd-201ENSMUST00000064950 1618 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hdac3O88895 Srp9-201ENSMUST00000027792 1367 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Hdac3O88895 March2-205ENSMUST00000173015 1418 ntTSL 3 BASIC21.45■■□□□ 1.02
Hdac3O88895 Rnf19b-201ENSMUST00000030584 2414 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
Hdac3O88895 Clk2-201ENSMUST00000090927 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC21.44■■□□□ 1.02
Hdac3O88895 Fkbp8-202ENSMUST00000119353 1720 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Hdac3O88895 Nelfe-204ENSMUST00000173357 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Hdac3O88895 Acvr2b-202ENSMUST00000165044 2093 ntTSL 2 BASIC21.41■■□□□ 1.02
Hdac3O88895 Smad2-202ENSMUST00000091831 1645 ntAPPRIS ALT1 TSL 5 BASIC21.41■■□□□ 1.02
Hdac3O88895 Tlx3-201ENSMUST00000037746 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Hdac3O88895 Fam220a-206ENSMUST00000196487 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Hdac3O88895 Gpr12-201ENSMUST00000036211 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Hdac3O88895 Gm17494-201ENSMUST00000072769 1800 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Hdac3O88895 Dazap1-201ENSMUST00000092305 1994 ntAPPRIS ALT1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Hdac3O88895 AC153890.1-201ENSMUST00000220021 2469 ntBASIC21.39■■□□□ 1.01
Hdac3O88895 Rras2-201ENSMUST00000069449 2275 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Hdac3O88895 BC037032-205ENSMUST00000187080 508 ntTSL 5 BASIC21.37■■□□□ 1.01
Hdac3O88895 Gm9397-201ENSMUST00000200125 605 ntBASIC21.37■■□□□ 1.01
Hdac3O88895 Dpf1-204ENSMUST00000108231 2040 ntTSL 5 BASIC21.37■■□□□ 1.01
Hdac3O88895 Eed-201ENSMUST00000107234 2067 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Hdac3O88895 Aspscr1-201ENSMUST00000026135 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Hdac3O88895 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC21.36■■□□□ 1.01
Hdac3O88895 Clptm1l-201ENSMUST00000022102 2340 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Hdac3O88895 Capns1-201ENSMUST00000001845 1600 ntAPPRIS P2 TSL 5 BASIC21.36■■□□□ 1.01
Hdac3O88895 Fam241a-201ENSMUST00000057198 1607 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Hdac3O88895 Cited2-203ENSMUST00000219558 2411 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
Hdac3O88895 Pon2-201ENSMUST00000057792 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Hdac3O88895 Dcaf15-202ENSMUST00000210279 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Hdac3O88895 Pax1-201ENSMUST00000109968 2643 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Hdac3O88895 Zfp358-201ENSMUST00000061508 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Hdac3O88895 Nr2f6-201ENSMUST00000002466 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Hdac3O88895 Cabp1-204ENSMUST00000112113 1621 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Hdac3O88895 Ica1-201ENSMUST00000038403 2075 ntAPPRIS P2 TSL 1 (best) BASIC21.33■■□□□ 1
Hdac3O88895 E2f6-201ENSMUST00000020908 2418 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Hdac3O88895 Tmem243-201ENSMUST00000115365 1040 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
Hdac3O88895 Gm24970-201ENSMUST00000175582 82 ntBASIC21.31■■□□□ 1
Hdac3O88895 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Hdac3O88895 Ctbp1-211ENSMUST00000202868 2436 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
Hdac3O88895 Phf23-205ENSMUST00000135814 2214 ntTSL 1 (best) BASIC21.29■■□□□ 1
Hdac3O88895 1810026B05Rik-202ENSMUST00000184554 782 ntTSL 3 BASIC21.29■■□□□ 1
Hdac3O88895 Prr3-201ENSMUST00000055454 2727 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
Hdac3O88895 Il3ra-201ENSMUST00000090591 1614 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Hdac3O88895 Efna3-201ENSMUST00000029673 2363 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
Hdac3O88895 Amigo1-201ENSMUST00000050909 5030 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Hdac3O88895 Zfp422-201ENSMUST00000057540 2375 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Hdac3O88895 Eid2-201ENSMUST00000059596 1392 ntAPPRIS P1 BASIC21.27■■□□□ 1
Hdac3O88895 1190005I06Rik-201ENSMUST00000123927 844 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
Hdac3O88895 Gm43863-201ENSMUST00000203822 1192 ntBASIC21.27■■□□□ 1
Hdac3O88895 E2f1-201ENSMUST00000000894 2755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hdac3O88895 Cpsf4-201ENSMUST00000070487 1606 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Hdac3O88895 Amigo1-203ENSMUST00000106659 1360 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Hdac3O88895 A730013G03Rik-202ENSMUST00000195012 2097 ntBASIC21.26■□□□□ 0.99
Hdac3O88895 Heca-201ENSMUST00000037879 5098 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hdac3O88895 Isoc1-201ENSMUST00000025503 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hdac3O88895 St7-202ENSMUST00000052113 2046 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hdac3O88895 Twist1-201ENSMUST00000049089 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Hdac3O88895 Smurf1-201ENSMUST00000085684 5343 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hdac3O88895 Sugct-202ENSMUST00000220514 1351 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Hdac3O88895 1810026B05Rik-206ENSMUST00000187421 519 ntTSL 3 BASIC21.25■□□□□ 0.99
Hdac3O88895 Stard3nl-210ENSMUST00000222869 1030 ntTSL 5 BASIC21.25■□□□□ 0.99
Hdac3O88895 1110008F13Rik-201ENSMUST00000029165 1045 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Hdac3O88895 Pcgf5-201ENSMUST00000062389 1566 ntTSL 5 BASIC21.24■□□□□ 0.99
Hdac3O88895 C1ql1-201ENSMUST00000057849 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Hdac3O88895 Peg12-201ENSMUST00000094339 2640 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
Hdac3O88895 Gm45855-201ENSMUST00000212546 880 ntBASIC21.23■□□□□ 0.99
Hdac3O88895 Snta1-202ENSMUST00000109728 2131 ntAPPRIS P2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hdac3O88895 Snta1-201ENSMUST00000028991 2125 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Hdac3O88895 Gas2l1-201ENSMUST00000037146 2686 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hdac3O88895 Qrich1-209ENSMUST00000194385 975 ntTSL 2 BASIC21.22■□□□□ 0.99
Hdac3O88895 Zswim5-201ENSMUST00000044823 5582 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Hdac3O88895 2310050C09Rik-201ENSMUST00000163439 1078 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
Hdac3O88895 Dennd5a-202ENSMUST00000106722 4862 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Hdac3O88895 Stau2-210ENSMUST00000149320 2214 ntTSL 5 BASIC21.21■□□□□ 0.99
Hdac3O88895 Mnx1-201ENSMUST00000001608 2018 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Hdac3O88895 Atp5a1-202ENSMUST00000114748 2674 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Hdac3O88895 Mcat-201ENSMUST00000061882 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hdac3O88895 Cdk2ap1-201ENSMUST00000031341 1315 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hdac3O88895 Tm6sf1-201ENSMUST00000041890 2226 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Hdac3O88895 Slc39a13-201ENSMUST00000073575 2469 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hdac3O88895 A530058N18Rik-204ENSMUST00000141209 709 ntTSL 5 BASIC21.19■□□□□ 0.98
Hdac3O88895 Arx-202ENSMUST00000113947 2454 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Hdac3O88895 AC157572.2-201ENSMUST00000226970 908 ntBASIC21.18■□□□□ 0.98
Hdac3O88895 Mast2-203ENSMUST00000106485 5705 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hdac3O88895 Mast2-204ENSMUST00000106486 5723 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
Hdac3O88895 Dazap1-202ENSMUST00000105361 1537 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Hdac3O88895 Nhlrc1-201ENSMUST00000052747 2294 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Hdac3O88895 Cdc14b-207ENSMUST00000221634 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 98.7 ms