Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 BC051019-202ENSMUST00000106735 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Acadvl-201ENSMUST00000018718 2020 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Zc3h14-203ENSMUST00000110104 3146 ntTSL 5 BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.61■□□□□ 0.41
Lima1Q9ERG0 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
Lima1Q9ERG0 Fam131b-203ENSMUST00000143278 4104 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Cadm3-201ENSMUST00000005470 2518 ntTSL 5 BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 4930426D05Rik-202ENSMUST00000139804 1650 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Crk-203ENSMUST00000108425 4290 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Gm26971-201ENSMUST00000182423 1072 ntBASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Rragd-201ENSMUST00000029946 5055 ntTSL 5 BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 St7l-202ENSMUST00000106769 2428 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Lima1Q9ERG0 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
Lima1Q9ERG0 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
Lima1Q9ERG0 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Lima1Q9ERG0 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Lima1Q9ERG0 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
Lima1Q9ERG0 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
Lima1Q9ERG0 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
Lima1Q9ERG0 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Lima1Q9ERG0 Otud5-202ENSMUST00000115665 3821 ntTSL 5 BASIC17.58■□□□□ 0.4
Lima1Q9ERG0 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lima1Q9ERG0 2510002D24Rik-202ENSMUST00000123146 361 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Lima1Q9ERG0 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Lima1Q9ERG0 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC17.58■□□□□ 0.4
Lima1Q9ERG0 Gm10033-202ENSMUST00000211874 928 ntBASIC17.58■□□□□ 0.4
Lima1Q9ERG0 Pard3-209ENSMUST00000160272 5815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.58■□□□□ 0.4
Lima1Q9ERG0 Zbtb32-202ENSMUST00000108151 1775 ntAPPRIS P1 TSL 5 BASIC17.58■□□□□ 0.4
Lima1Q9ERG0 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Myh7b-201ENSMUST00000092995 6163 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Msi2-201ENSMUST00000092794 1855 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Parg-208ENSMUST00000170840 2894 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Gm5874-201ENSMUST00000096101 508 ntBASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Snap91-202ENSMUST00000074468 4336 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
Lima1Q9ERG0 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Rnf26-208ENSMUST00000185479 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Ube2d3-202ENSMUST00000166033 2504 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Fignl2-201ENSMUST00000178140 4206 ntAPPRIS P1 BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Ankib1-201ENSMUST00000043551 6426 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Gm18284-201ENSMUST00000172604 624 ntBASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Gm42642-201ENSMUST00000200683 355 ntBASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Gm19094-201ENSMUST00000209791 1246 ntBASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Nfe2l1-202ENSMUST00000107657 3869 ntAPPRIS P3 TSL 5 BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Bcar1-201ENSMUST00000166232 3142 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Stambp-206ENSMUST00000206400 2144 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Prkar2a-201ENSMUST00000035220 4965 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Ap2m1-202ENSMUST00000090023 2080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
Lima1Q9ERG0 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Rnf103-201ENSMUST00000064637 3264 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC17.55■□□□□ 0.4
Lima1Q9ERG0 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 38.8 ms