Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 B4galt5-201ENSMUST00000109221 4210 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 1700067K01Rik-201ENSMUST00000060357 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Paqr7-201ENSMUST00000081525 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Crocc-201ENSMUST00000040222 6248 ntTSL 5 BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC18.72■□□□□ 0.59
Ddx56Q9D0R4 Idnk-204ENSMUST00000226010 1898 ntBASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Gm12896-201ENSMUST00000118430 226 ntBASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Sohlh1-201ENSMUST00000076989 1289 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Ddx56Q9D0R4 Acvr2b-205ENSMUST00000215746 3175 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
Ddx56Q9D0R4 Ahcyl2-202ENSMUST00000102995 5155 ntAPPRIS ALT1 TSL 5 BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Tsc22d1-201ENSMUST00000022587 1762 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Asap2-204ENSMUST00000101562 5552 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Mtag2-201ENSMUST00000058665 714 ntBASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 AC108858.1-201ENSMUST00000228461 1498 ntBASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Tmem260-209ENSMUST00000226422 6333 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ddx56Q9D0R4 Kdm1a-202ENSMUST00000105847 3028 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Sarnp-201ENSMUST00000105230 918 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Gm12441-201ENSMUST00000121806 588 ntBASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Vps9d1-203ENSMUST00000122363 2952 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Prob1-203ENSMUST00000190196 4888 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.69■□□□□ 0.58
Ddx56Q9D0R4 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Map7-201ENSMUST00000020173 4252 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ddx56Q9D0R4 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC18.67■□□□□ 0.58
Ddx56Q9D0R4 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms