Protein–RNA interactions for Protein: Q8CII8

Syne4, Nesprin-4, mousemouse

Predictions only

Length 388 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Syne4Q8CII8 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Syne4Q8CII8 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Syne4Q8CII8 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Syne4Q8CII8 Lhx8-205ENSMUST00000205251 1729 ntAPPRIS P1 TSL 5 BASIC20.21■□□□□ 0.83
Syne4Q8CII8 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Syne4Q8CII8 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Syne4Q8CII8 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Syne4Q8CII8 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Syne4Q8CII8 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Syne4Q8CII8 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC20.2■□□□□ 0.83
Syne4Q8CII8 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
Syne4Q8CII8 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC20.2■□□□□ 0.82
Syne4Q8CII8 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Gm28033-201ENSMUST00000184224 96 ntBASIC20.2■□□□□ 0.82
Syne4Q8CII8 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Gm7461-201ENSMUST00000058918 827 ntBASIC20.2■□□□□ 0.82
Syne4Q8CII8 Tctex1d4-201ENSMUST00000062206 990 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC20.2■□□□□ 0.82
Syne4Q8CII8 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.2■□□□□ 0.82
Syne4Q8CII8 Spsb2-203ENSMUST00000112473 1322 ntBASIC20.2■□□□□ 0.82
Syne4Q8CII8 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.2■□□□□ 0.82
Syne4Q8CII8 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Syne4Q8CII8 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Pigw-202ENSMUST00000108080 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Mir1668-201ENSMUST00000184114 107 ntBASIC20.19■□□□□ 0.82
Syne4Q8CII8 Gm17807-201ENSMUST00000186869 298 ntBASIC20.19■□□□□ 0.82
Syne4Q8CII8 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Gm7854-202ENSMUST00000187409 1433 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Fam181a-203ENSMUST00000191218 1419 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
Syne4Q8CII8 Chn2-201ENSMUST00000046856 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Zbtb10-201ENSMUST00000155203 7414 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Sirt7-202ENSMUST00000106183 427 ntTSL 3 BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Fam71b-201ENSMUST00000063166 2185 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
Syne4Q8CII8 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Gm13025-201ENSMUST00000141469 1163 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
Syne4Q8CII8 Dscam-201ENSMUST00000056102 7498 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 1700024G13Rik-201ENSMUST00000100723 850 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Sap18-202ENSMUST00000111268 662 ntTSL 2 BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Atp6v0b-208ENSMUST00000150204 935 ntTSL 5 BASIC20.16■□□□□ 0.82
Syne4Q8CII8 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Insl3-201ENSMUST00000034261 623 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 BC048679-201ENSMUST00000073406 522 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
Syne4Q8CII8 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Syne4Q8CII8 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Syne4Q8CII8 Gm17808-201ENSMUST00000200859 894 ntBASIC20.15■□□□□ 0.82
Syne4Q8CII8 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC20.15■□□□□ 0.82
Syne4Q8CII8 Pagr1a-203ENSMUST00000206416 558 ntTSL 3 BASIC20.15■□□□□ 0.82
Syne4Q8CII8 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Syne4Q8CII8 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Syne4Q8CII8 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Syne4Q8CII8 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
Syne4Q8CII8 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.15■□□□□ 0.82
Syne4Q8CII8 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms