Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Gm8909-202ENSMUST00000097335 1182 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Keap1-206ENSMUST00000216436 2498 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Abhd5-202ENSMUST00000111497 2576 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 4930540M05Rik-201ENSMUST00000180527 2068 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Trim56Q80VI1 Maf-202ENSMUST00000109104 6360 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Mpst-201ENSMUST00000043865 1413 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC21.05■□□□□ 0.96
Trim56Q80VI1 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Tmod1-201ENSMUST00000107773 3158 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Trim56Q80VI1 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Trim56Q80VI1 C030014I23Rik-201ENSMUST00000080911 1810 ntBASIC21.04■□□□□ 0.96
Trim56Q80VI1 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Rac1-202ENSMUST00000100489 2325 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Snx16-202ENSMUST00000099223 2512 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Gm12382-201ENSMUST00000122005 922 ntBASIC21.04■□□□□ 0.96
Trim56Q80VI1 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Siglecf-202ENSMUST00000121494 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Lrch4-204ENSMUST00000176667 2209 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Trim56Q80VI1 Slc7a10-201ENSMUST00000001854 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Gm715-201ENSMUST00000117865 831 ntBASIC21.03■□□□□ 0.96
Trim56Q80VI1 Tex30-204ENSMUST00000128190 1275 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Tnfsf13-201ENSMUST00000018896 1407 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Trim56Q80VI1 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Hmga1-205ENSMUST00000118599 529 ntAPPRIS P3 TSL 3 BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Gm11643-201ENSMUST00000119578 864 ntBASIC21.02■□□□□ 0.96
Trim56Q80VI1 Gm37939-201ENSMUST00000192309 447 ntTSL 5 BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Arhgef33-211ENSMUST00000225658 473 ntBASIC21.02■□□□□ 0.96
Trim56Q80VI1 Syngr1-202ENSMUST00000009728 819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Trim56Q80VI1 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Trim56Q80VI1 Osbpl1a-203ENSMUST00000118313 2893 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
Trim56Q80VI1 Tmem81-201ENSMUST00000058167 1742 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Ptpra-201ENSMUST00000028769 3227 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 AC124581.1-201ENSMUST00000225416 1399 ntBASIC21.01■□□□□ 0.95
Trim56Q80VI1 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Gm6576-201ENSMUST00000169678 883 ntBASIC21.01■□□□□ 0.95
Trim56Q80VI1 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Gm29791-202ENSMUST00000207888 369 ntBASIC21.01■□□□□ 0.95
Trim56Q80VI1 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Itgb5-201ENSMUST00000069345 3056 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 B3galnt2-204ENSMUST00000221300 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Ciz1-205ENSMUST00000113338 2666 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
Trim56Q80VI1 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim56Q80VI1 Galk2-202ENSMUST00000094604 1928 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Trim56Q80VI1 Krt86-201ENSMUST00000088049 1960 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Trim56Q80VI1 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC21■□□□□ 0.95
Trim56Q80VI1 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC21■□□□□ 0.95
Trim56Q80VI1 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
Trim56Q80VI1 Ube2a-208ENSMUST00000202812 719 ntTSL 2 BASIC21■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms