Protein–RNA interactions for Protein: Q64347

Clcn1, Chloride channel protein 1, mousemouse

Predictions only

Length 994 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn1Q64347 Gm18032-201ENSMUST00000222541 538 ntBASIC22.56■■□□□ 1.2
Clcn1Q64347 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Clcn1Q64347 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC22.56■■□□□ 1.2
Clcn1Q64347 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
Clcn1Q64347 AU019823-202ENSMUST00000145139 2805 ntTSL 2 BASIC22.56■■□□□ 1.2
Clcn1Q64347 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Clcn1Q64347 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC22.55■■□□□ 1.2
Clcn1Q64347 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Clcn1Q64347 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
Clcn1Q64347 Gm6345-202ENSMUST00000180900 204 ntBASIC22.55■■□□□ 1.2
Clcn1Q64347 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Clcn1Q64347 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC22.55■■□□□ 1.2
Clcn1Q64347 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
Clcn1Q64347 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
Clcn1Q64347 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC22.54■■□□□ 1.2
Clcn1Q64347 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Gm17182-201ENSMUST00000163795 860 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Gm6728-201ENSMUST00000178117 1065 ntBASIC22.54■■□□□ 1.2
Clcn1Q64347 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
Clcn1Q64347 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Clcn1Q64347 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Clcn1Q64347 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Clcn1Q64347 Fam105a-203ENSMUST00000226170 3043 ntBASIC22.53■■□□□ 1.2
Clcn1Q64347 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC22.53■■□□□ 1.2
Clcn1Q64347 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Clcn1Q64347 Agap3-205ENSMUST00000199856 2685 ntTSL 5 BASIC22.53■■□□□ 1.2
Clcn1Q64347 Zcchc2-201ENSMUST00000118196 5796 ntAPPRIS P4 TSL 5 BASIC22.53■■□□□ 1.2
Clcn1Q64347 Gm10013-201ENSMUST00000106074 672 ntBASIC22.53■■□□□ 1.2
Clcn1Q64347 Gm4217-201ENSMUST00000182243 1002 ntBASIC22.53■■□□□ 1.2
Clcn1Q64347 Gm37820-201ENSMUST00000194021 2147 ntBASIC22.53■■□□□ 1.2
Clcn1Q64347 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC22.53■■□□□ 1.2
Clcn1Q64347 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Clcn1Q64347 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Clcn1Q64347 Gm42922-201ENSMUST00000195887 2078 ntBASIC22.53■■□□□ 1.2
Clcn1Q64347 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
Clcn1Q64347 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Syncrip-205ENSMUST00000173801 2944 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Gm45058-201ENSMUST00000205810 766 ntBASIC22.52■■□□□ 1.2
Clcn1Q64347 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC22.52■■□□□ 1.2
Clcn1Q64347 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.19
Clcn1Q64347 2310022A10Rik-201ENSMUST00000067386 2701 ntAPPRIS P2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Clcn1Q64347 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Clcn1Q64347 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Clcn1Q64347 Esrrb-201ENSMUST00000021680 2136 ntAPPRIS P1 TSL 5 BASIC22.51■■□□□ 1.19
Clcn1Q64347 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC22.51■■□□□ 1.19
Clcn1Q64347 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Clcn1Q64347 Gm38027-201ENSMUST00000192315 235 ntBASIC22.51■■□□□ 1.19
Clcn1Q64347 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
Clcn1Q64347 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC22.51■■□□□ 1.19
Clcn1Q64347 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC22.5■■□□□ 1.19
Clcn1Q64347 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC22.5■■□□□ 1.19
Clcn1Q64347 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Arnt-204ENSMUST00000107160 783 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Tlcd2-202ENSMUST00000108435 1112 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Bex3-202ENSMUST00000113112 826 ntAPPRIS ALT2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC22.5■■□□□ 1.19
Clcn1Q64347 Nkiras2-203ENSMUST00000107376 1727 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
Clcn1Q64347 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Vmn1r17-201ENSMUST00000227186 2234 ntAPPRIS P2 BASIC22.5■■□□□ 1.19
Clcn1Q64347 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Gm19439-201ENSMUST00000198195 2273 ntBASIC22.5■■□□□ 1.19
Clcn1Q64347 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Clcn1Q64347 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC22.49■■□□□ 1.19
Clcn1Q64347 4921536K21Rik-201ENSMUST00000020712 2590 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
Clcn1Q64347 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC22.49■■□□□ 1.19
Clcn1Q64347 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 Cnn1-203ENSMUST00000214601 1225 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 Fgf9-202ENSMUST00000074654 1198 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC22.49■■□□□ 1.19
Clcn1Q64347 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Clcn1Q64347 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC22.48■■□□□ 1.19
Clcn1Q64347 Cdpf1-204ENSMUST00000144067 761 ntAPPRIS P1 TSL 2 BASIC22.48■■□□□ 1.19
Clcn1Q64347 Gm3331-201ENSMUST00000183423 1017 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Clcn1Q64347 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC22.48■■□□□ 1.19
Clcn1Q64347 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC22.48■■□□□ 1.19
Clcn1Q64347 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC22.48■■□□□ 1.19
Clcn1Q64347 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC22.48■■□□□ 1.19
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms