Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Babam1-201ENSMUST00000002473 1433 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Col11a1Q61245 Bhlhe23-201ENSMUST00000108878 2520 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
Col11a1Q61245 Ngrn-201ENSMUST00000117989 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Ndufaf8-201ENSMUST00000106223 781 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Col11a1Q61245 Trim25-202ENSMUST00000100627 1433 ntTSL 5 BASIC20.07■□□□□ 0.8
Col11a1Q61245 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col11a1Q61245 Gm44924-201ENSMUST00000138087 421 ntTSL 3 BASIC20.06■□□□□ 0.8
Col11a1Q61245 Slc19a2-204ENSMUST00000169394 894 ntTSL 5 BASIC20.06■□□□□ 0.8
Col11a1Q61245 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col11a1Q61245 Gm29791-202ENSMUST00000207888 369 ntBASIC20.06■□□□□ 0.8
Col11a1Q61245 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col11a1Q61245 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col11a1Q61245 Ube2d2a-202ENSMUST00000170693 2483 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col11a1Q61245 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
Col11a1Q61245 Actl10-202ENSMUST00000226583 1501 ntBASIC20.06■□□□□ 0.8
Col11a1Q61245 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Col11a1Q61245 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col11a1Q61245 Nfs1-201ENSMUST00000029147 2051 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Col11a1Q61245 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col11a1Q61245 2810468N07Rik-201ENSMUST00000163493 1349 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col11a1Q61245 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col11a1Q61245 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC20.05■□□□□ 0.8
Col11a1Q61245 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col11a1Q61245 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
Col11a1Q61245 Flg-202ENSMUST00000178008 768 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
Col11a1Q61245 Flg-205ENSMUST00000179250 765 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
Col11a1Q61245 Flg-206ENSMUST00000179477 768 ntAPPRIS ALT2 BASIC20.05■□□□□ 0.8
Col11a1Q61245 Gm5867-201ENSMUST00000063197 592 ntBASIC20.05■□□□□ 0.8
Col11a1Q61245 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col11a1Q61245 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Col11a1Q61245 Gm26661-201ENSMUST00000181025 471 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Col11a1Q61245 Gm27742-201ENSMUST00000184667 60 ntBASIC20.04■□□□□ 0.8
Col11a1Q61245 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Col11a1Q61245 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col11a1Q61245 A830052D11Rik-201ENSMUST00000181729 1130 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Col11a1Q61245 AC120002.2-201ENSMUST00000220205 773 ntBASIC20.04■□□□□ 0.8
Col11a1Q61245 Gm3488-202ENSMUST00000181562 1945 ntAPPRIS P5 TSL 5 BASIC20.04■□□□□ 0.8
Col11a1Q61245 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col11a1Q61245 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col11a1Q61245 Gm45906-201ENSMUST00000208911 1430 ntBASIC20.03■□□□□ 0.8
Col11a1Q61245 Cldn7-204ENSMUST00000108597 913 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Col11a1Q61245 Olfr129-201ENSMUST00000122318 993 ntBASIC20.03■□□□□ 0.8
Col11a1Q61245 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC20.03■□□□□ 0.8
Col11a1Q61245 Prr3-202ENSMUST00000165613 767 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Col11a1Q61245 4933412L11Rik-201ENSMUST00000203702 1044 ntBASIC20.03■□□□□ 0.8
Col11a1Q61245 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Col11a1Q61245 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col11a1Q61245 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Col11a1Q61245 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col11a1Q61245 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col11a1Q61245 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Col11a1Q61245 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col11a1Q61245 Scml4-203ENSMUST00000105495 1033 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col11a1Q61245 Rnf141-201ENSMUST00000106682 1101 ntAPPRIS P1 TSL 3 BASIC20.02■□□□□ 0.8
Col11a1Q61245 Srpx-202ENSMUST00000115543 1218 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col11a1Q61245 Hmga1-206ENSMUST00000119486 1003 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
Col11a1Q61245 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
Col11a1Q61245 Tgds-204ENSMUST00000228543 1594 ntBASIC20.02■□□□□ 0.8
Col11a1Q61245 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC20.02■□□□□ 0.8
Col11a1Q61245 Cxcl14-202ENSMUST00000224801 1467 ntBASIC20.02■□□□□ 0.8
Col11a1Q61245 Hsf4-202ENSMUST00000163734 1630 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Col11a1Q61245 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col11a1Q61245 Gm28626-201ENSMUST00000187004 520 ntTSL 2 BASIC20.02■□□□□ 0.79
Col11a1Q61245 Ankrd23-204ENSMUST00000194853 1073 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
Col11a1Q61245 Gm43514-201ENSMUST00000198852 424 ntBASIC20.02■□□□□ 0.79
Col11a1Q61245 Pdrg1-201ENSMUST00000028972 1273 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col11a1Q61245 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Col11a1Q61245 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
Col11a1Q61245 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Slc25a3-201ENSMUST00000076694 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Hhat-203ENSMUST00000128619 1819 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Idh1-201ENSMUST00000097709 2302 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Urah-202ENSMUST00000106050 719 ntAPPRIS ALT2 TSL 2 BASIC20.01■□□□□ 0.79
Col11a1Q61245 Ctnnal1-202ENSMUST00000107612 850 ntTSL 3 BASIC20.01■□□□□ 0.79
Col11a1Q61245 Gm27459-201ENSMUST00000184860 107 ntBASIC20.01■□□□□ 0.79
Col11a1Q61245 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Picalm-212ENSMUST00000208730 3427 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Col11a1Q61245 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20■□□□□ 0.79
Col11a1Q61245 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col11a1Q61245 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col11a1Q61245 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Col11a1Q61245 Btn1a1-202ENSMUST00000110434 1077 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col11a1Q61245 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC20■□□□□ 0.79
Col11a1Q61245 Gm28659-201ENSMUST00000188013 759 ntBASIC20■□□□□ 0.79
Col11a1Q61245 Gm6443-201ENSMUST00000203599 874 ntBASIC20■□□□□ 0.79
Col11a1Q61245 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC20■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 21.7 ms