Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Lce1j-201ENSMUST00000107304 420 ntAPPRIS P1 BASIC19.61■□□□□ 0.73
Cln3Q61124 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Prr3-209ENSMUST00000174849 581 ntTSL 2 BASIC19.61■□□□□ 0.73
Cln3Q61124 Stx3-208ENSMUST00000211641 1018 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Lsm10-201ENSMUST00000055575 943 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cln3Q61124 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC19.6■□□□□ 0.73
Cln3Q61124 Gm4316-202ENSMUST00000212490 1115 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cln3Q61124 Gm7370-201ENSMUST00000219471 767 ntBASIC19.6■□□□□ 0.73
Cln3Q61124 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Cln3Q61124 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cln3Q61124 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Cln3Q61124 Gm6093-201ENSMUST00000221792 1623 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Cln3Q61124 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cln3Q61124 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Cln3Q61124 Col23a1-201ENSMUST00000102765 5658 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Cln3Q61124 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Mrpl10-201ENSMUST00000001485 1708 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC19.59■□□□□ 0.73
Cln3Q61124 Ank2-226ENSMUST00000189368 339 ntBASIC19.59■□□□□ 0.73
Cln3Q61124 AC130711.1-201ENSMUST00000224277 906 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
Cln3Q61124 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.59■□□□□ 0.73
Cln3Q61124 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Dirc2-201ENSMUST00000023554 5395 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
Cln3Q61124 Frmd4a-201ENSMUST00000075767 6761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Cln3Q61124 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cln3Q61124 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cln3Q61124 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cln3Q61124 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cln3Q61124 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Cln3Q61124 Ndufb11-201ENSMUST00000116621 908 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cln3Q61124 Gm16061-201ENSMUST00000122167 857 ntBASIC19.58■□□□□ 0.72
Cln3Q61124 Fam149b-216ENSMUST00000225942 2151 ntAPPRIS ALT2 BASIC19.58■□□□□ 0.72
Cln3Q61124 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Cln3Q61124 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Cln3Q61124 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
Cln3Q61124 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Cln3Q61124 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Mzt2-202ENSMUST00000117136 758 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC19.57■□□□□ 0.72
Cln3Q61124 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC19.57■□□□□ 0.72
Cln3Q61124 4930544D05Rik-204ENSMUST00000180052 755 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Cln3Q61124 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Cln3Q61124 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Praf2-201ENSMUST00000033489 1339 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Eif3j2-201ENSMUST00000057110 2379 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Cln3Q61124 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 H2afz-207ENSMUST00000174561 810 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Gm27741-201ENSMUST00000185060 237 ntBASIC19.56■□□□□ 0.72
Cln3Q61124 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Ttc32-203ENSMUST00000219488 768 ntTSL 3 BASIC19.56■□□□□ 0.72
Cln3Q61124 Fam92a-201ENSMUST00000087052 1292 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Cadps-204ENSMUST00000177814 5461 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Cln3Q61124 Gm8258-201ENSMUST00000055593 1449 ntBASIC19.56■□□□□ 0.72
Cln3Q61124 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Cln3Q61124 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.56■□□□□ 0.72
Cln3Q61124 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Cln3Q61124 Nit1-202ENSMUST00000111295 1335 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Gm13420-201ENSMUST00000129574 1091 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Cln3Q61124 Dctn3-201ENSMUST00000030158 973 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Mtnr1b-201ENSMUST00000057920 1095 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Klhdc1-201ENSMUST00000063445 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Cdkn2c-201ENSMUST00000063531 1106 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Cln3Q61124 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Tspan10-201ENSMUST00000044105 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
Cln3Q61124 Cdk5-201ENSMUST00000030814 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Cln3Q61124 Nlrp5-ps-201ENSMUST00000044683 1913 ntTSL 2 BASIC19.55■□□□□ 0.72
Cln3Q61124 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC19.54■□□□□ 0.72
Cln3Q61124 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Cln3Q61124 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC19.54■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 25.8 ms