Protein–RNA interactions for Protein: Q60847

Col12a1, Collagen alpha-1(XII) chain, mousemouse

Predictions only

Length 3,120 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col12a1Q60847 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Col12a1Q60847 Zfp800-203ENSMUST00000115321 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Hotairm1-202ENSMUST00000132559 713 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.68■□□□□ 0.42
Col12a1Q60847 Utp23-204ENSMUST00000161651 582 ntTSL 5 BASIC17.68■□□□□ 0.42
Col12a1Q60847 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC17.68■□□□□ 0.42
Col12a1Q60847 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC17.68■□□□□ 0.42
Col12a1Q60847 Aldoa-ps3-201ENSMUST00000217558 306 ntBASIC17.68■□□□□ 0.42
Col12a1Q60847 Iscu-201ENSMUST00000026937 957 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC17.68■□□□□ 0.42
Col12a1Q60847 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Rbm4-203ENSMUST00000178615 1018 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 BC049762-201ENSMUST00000054226 760 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Hist1h4j-201ENSMUST00000087714 774 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Col12a1Q60847 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Col12a1Q60847 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC17.67■□□□□ 0.42
Col12a1Q60847 Mkln1os-202ENSMUST00000144232 964 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC17.67■□□□□ 0.42
Col12a1Q60847 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
Col12a1Q60847 Gm11355-201ENSMUST00000121120 306 ntBASIC17.67■□□□□ 0.42
Col12a1Q60847 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC17.67■□□□□ 0.42
Col12a1Q60847 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Hras-201ENSMUST00000026572 2828 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.67■□□□□ 0.42
Col12a1Q60847 Chchd7-205ENSMUST00000120732 711 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Pabpc1l2b-ps-201ENSMUST00000124538 690 ntBASIC17.67■□□□□ 0.42
Col12a1Q60847 Gm45328-201ENSMUST00000210942 917 ntBASIC17.67■□□□□ 0.42
Col12a1Q60847 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Col12a1Q60847 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col12a1Q60847 Best2-201ENSMUST00000059072 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col12a1Q60847 AC159093.1-201ENSMUST00000227779 380 ntBASIC17.66■□□□□ 0.42
Col12a1Q60847 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC17.66■□□□□ 0.42
Col12a1Q60847 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col12a1Q60847 Tex30-213ENSMUST00000156392 1122 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
Col12a1Q60847 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Col12a1Q60847 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Col12a1Q60847 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC17.65■□□□□ 0.42
Col12a1Q60847 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
Col12a1Q60847 Gnb1-203ENSMUST00000165335 3143 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col12a1Q60847 Gm26549-201ENSMUST00000181112 1209 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col12a1Q60847 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col12a1Q60847 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
Col12a1Q60847 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col12a1Q60847 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
Col12a1Q60847 Gm11452-201ENSMUST00000122376 690 ntBASIC17.65■□□□□ 0.42
Col12a1Q60847 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
Col12a1Q60847 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC17.64■□□□□ 0.41
Col12a1Q60847 Vti1a-206ENSMUST00000225529 1244 ntBASIC17.64■□□□□ 0.41
Col12a1Q60847 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Col12a1Q60847 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Bpifb4-202ENSMUST00000109757 2420 ntAPPRIS P2 TSL 5 BASIC17.64■□□□□ 0.41
Col12a1Q60847 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
Col12a1Q60847 Rnf5-201ENSMUST00000015622 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
Col12a1Q60847 Gm17949-201ENSMUST00000210548 1179 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
Col12a1Q60847 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Dbf4-207ENSMUST00000171808 2402 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
Col12a1Q60847 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col12a1Q60847 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC17.63■□□□□ 0.41
Col12a1Q60847 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col12a1Q60847 Hoxc13-201ENSMUST00000001700 2461 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col12a1Q60847 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col12a1Q60847 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
Col12a1Q60847 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col12a1Q60847 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col12a1Q60847 A930029G22Rik-201ENSMUST00000181032 1710 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col12a1Q60847 Pou4f1-201ENSMUST00000053016 4445 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
Col12a1Q60847 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
Col12a1Q60847 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
Col12a1Q60847 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC17.63■□□□□ 0.41
Col12a1Q60847 Ppp1r14c-201ENSMUST00000043374 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col12a1Q60847 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC17.62■□□□□ 0.41
Col12a1Q60847 Mir770-201ENSMUST00000103252 94 ntBASIC17.62■□□□□ 0.41
Col12a1Q60847 Gm5145-201ENSMUST00000095633 837 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
Col12a1Q60847 Alkal1-201ENSMUST00000133144 971 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col12a1Q60847 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col12a1Q60847 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
Col12a1Q60847 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
Col12a1Q60847 Tsks-202ENSMUST00000120929 1843 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms