Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Brms1l-201ENSMUST00000059250 2609 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 AC122335.2-201ENSMUST00000213901 6181 ntBASIC19.07■□□□□ 0.64
Upf3bQ3ULL6 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Gm10138-203ENSMUST00000206952 366 ntBASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Brpf1-204ENSMUST00000113122 4773 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Dmtn-207ENSMUST00000228001 2437 ntBASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Gm37374-201ENSMUST00000194954 1829 ntBASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
Upf3bQ3ULL6 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Ndufa10-201ENSMUST00000027478 2020 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Col9a3-203ENSMUST00000132527 3046 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Tnfaip8l2-201ENSMUST00000013851 1122 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Gnb5-201ENSMUST00000076889 1188 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Ccdc102a-201ENSMUST00000077955 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
Upf3bQ3ULL6 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.04■□□□□ 0.64
Upf3bQ3ULL6 Nr4a1-201ENSMUST00000023779 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Elmo2-204ENSMUST00000103088 3052 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Pigp-203ENSMUST00000113910 966 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Gm18666-201ENSMUST00000190039 958 ntBASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Gm10638-201ENSMUST00000098532 905 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Trpc4ap-202ENSMUST00000103140 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Cops8-201ENSMUST00000036153 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Fam222a-201ENSMUST00000043650 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
Upf3bQ3ULL6 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Zfp560-202ENSMUST00000143992 608 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Gm27011-201ENSMUST00000182352 972 ntBASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Krt77-201ENSMUST00000087996 2930 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
Upf3bQ3ULL6 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
Upf3bQ3ULL6 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Krt82-201ENSMUST00000023713 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Gm5297-201ENSMUST00000198555 1171 ntBASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
Upf3bQ3ULL6 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Dlg1-205ENSMUST00000115201 3248 ntTSL 5 BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC19■□□□□ 0.63
Upf3bQ3ULL6 Gm15375-201ENSMUST00000119510 849 ntBASIC19■□□□□ 0.63
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms