Protein–RNA interactions for Protein: Q2UY11

Col28a1, Collagen alpha-1(XXVIII) chain, mousemouse

Predictions only

Length 1,141 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col28a1Q2UY11 Gm10167-201ENSMUST00000150411 1479 ntBASIC17.31■□□□□ 0.36
Col28a1Q2UY11 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Gm43294-201ENSMUST00000202850 2490 ntBASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Gm37194-201ENSMUST00000193092 3031 ntBASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Ino80e-201ENSMUST00000050833 1944 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Card10-202ENSMUST00000164826 4726 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Sprtn-201ENSMUST00000034467 4464 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Map3k10-202ENSMUST00000108341 3403 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Zdhhc6-201ENSMUST00000076891 2263 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col28a1Q2UY11 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Pgm3-202ENSMUST00000072585 1920 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Gm19554-201ENSMUST00000220934 2076 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Proser2-201ENSMUST00000054254 2061 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Uhmk1-202ENSMUST00000123399 7775 ntTSL 5 BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Nsg1-201ENSMUST00000031009 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Tmem151b-201ENSMUST00000180252 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Olfr718-ps1-204ENSMUST00000218872 963 ntAPPRIS ALT2 BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Rtn4-204ENSMUST00000102842 2257 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Trim24-201ENSMUST00000031859 4042 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Zcchc4-203ENSMUST00000113904 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Gm45244-201ENSMUST00000211328 2200 ntBASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Mapk8ip3-221ENSMUST00000178969 5579 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Col28a1Q2UY11 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Rps6ka1-202ENSMUST00000105894 3135 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Atp8b2-201ENSMUST00000069805 5559 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Usp48-201ENSMUST00000055131 5722 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Aurkaip1-203ENSMUST00000105592 1029 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Gm13234-201ENSMUST00000120010 747 ntBASIC17.28■□□□□ 0.36
Col28a1Q2UY11 AI507597-201ENSMUST00000140726 880 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Cacna2d1-207ENSMUST00000196750 1272 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Eif2b5-201ENSMUST00000003320 3186 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Gm8309-201ENSMUST00000206627 1448 ntBASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Reep4-203ENSMUST00000226563 1444 ntBASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Cyr61-201ENSMUST00000029846 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col28a1Q2UY11 Scarf2-201ENSMUST00000012161 3302 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Gm12356-201ENSMUST00000122854 353 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Zfand3-202ENSMUST00000226208 923 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col28a1Q2UY11 Vkorc1l1-203ENSMUST00000201855 4809 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col28a1Q2UY11 Phtf1-203ENSMUST00000090685 3006 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col28a1Q2UY11 Tmem51os1-202ENSMUST00000141769 2131 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col28a1Q2UY11 Abhd10-201ENSMUST00000066983 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col28a1Q2UY11 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC17.27■□□□□ 0.35
Col28a1Q2UY11 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC17.27■□□□□ 0.35
Col28a1Q2UY11 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Frmd5-203ENSMUST00000121219 2262 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Sco2-201ENSMUST00000167643 1143 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Sart1-201ENSMUST00000044207 5091 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col28a1Q2UY11 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 17 ms