Protein–RNA interactions for Protein: Q05722

Col9a1, Collagen alpha-1(IX) chain, mousemouse

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col9a1Q05722 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
Col9a1Q05722 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col9a1Q05722 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col9a1Q05722 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
Col9a1Q05722 Gm5540-201ENSMUST00000131852 1848 ntBASIC17.49■□□□□ 0.39
Col9a1Q05722 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col9a1Q05722 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col9a1Q05722 Nisch-201ENSMUST00000022469 5559 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
Col9a1Q05722 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Col9a1Q05722 Gm1818-201ENSMUST00000169406 1184 ntBASIC17.49■□□□□ 0.39
Col9a1Q05722 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC17.49■□□□□ 0.39
Col9a1Q05722 Cmtm3-204ENSMUST00000212081 850 ntAPPRIS P1 TSL 5 BASIC17.49■□□□□ 0.39
Col9a1Q05722 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col9a1Q05722 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
Col9a1Q05722 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Col9a1Q05722 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Gpr162-201ENSMUST00000046893 2676 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Col9a1Q05722 H2-Bl-204ENSMUST00000184502 862 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Gm8797-201ENSMUST00000192045 490 ntAPPRIS P1 BASIC17.48■□□□□ 0.39
Col9a1Q05722 H2-Bl-209ENSMUST00000194244 862 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Lin37-201ENSMUST00000043975 998 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Dpy19l1-206ENSMUST00000170356 4715 ntAPPRIS P1 TSL 5 BASIC17.48■□□□□ 0.39
Col9a1Q05722 Tspan31-201ENSMUST00000060991 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Col9a1Q05722 Grk6-202ENSMUST00000099482 2169 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Ilk-212ENSMUST00000163389 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC17.47■□□□□ 0.39
Col9a1Q05722 Gm11860-201ENSMUST00000122346 1010 ntBASIC17.47■□□□□ 0.39
Col9a1Q05722 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC17.47■□□□□ 0.39
Col9a1Q05722 Gm26695-201ENSMUST00000180920 1251 ntTSL 5 BASIC17.47■□□□□ 0.39
Col9a1Q05722 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC17.47■□□□□ 0.39
Col9a1Q05722 AC153937.1-201ENSMUST00000218734 412 ntBASIC17.47■□□□□ 0.39
Col9a1Q05722 Rgp1-201ENSMUST00000030190 1292 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.47■□□□□ 0.39
Col9a1Q05722 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.47■□□□□ 0.39
Col9a1Q05722 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC17.47■□□□□ 0.39
Col9a1Q05722 Gm45640-201ENSMUST00000210665 1896 ntBASIC17.47■□□□□ 0.39
Col9a1Q05722 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Nfe2-210ENSMUST00000156927 1608 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
Col9a1Q05722 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Col9a1Q05722 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col9a1Q05722 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col9a1Q05722 Nkapl-201ENSMUST00000068235 1463 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Col9a1Q05722 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC17.46■□□□□ 0.39
Col9a1Q05722 Gm12350-201ENSMUST00000121208 462 ntBASIC17.46■□□□□ 0.39
Col9a1Q05722 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC17.46■□□□□ 0.39
Col9a1Q05722 Nptn-211ENSMUST00000177064 582 ntTSL 5 BASIC17.46■□□□□ 0.39
Col9a1Q05722 AC158804.1-201ENSMUST00000219046 541 ntTSL 3 BASIC17.46■□□□□ 0.39
Col9a1Q05722 Rfc4-201ENSMUST00000023598 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col9a1Q05722 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Col9a1Q05722 Lsr-205ENSMUST00000205961 2021 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col9a1Q05722 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col9a1Q05722 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
Col9a1Q05722 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Col9a1Q05722 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Adcy9-203ENSMUST00000120080 4974 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Tsen15-201ENSMUST00000015124 1133 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Gm42670-201ENSMUST00000201816 1292 ntBASIC17.45■□□□□ 0.38
Col9a1Q05722 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 AC159114.1-201ENSMUST00000220349 266 ntBASIC17.45■□□□□ 0.38
Col9a1Q05722 Gm13042-201ENSMUST00000119244 1955 ntBASIC17.45■□□□□ 0.38
Col9a1Q05722 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Skap1-203ENSMUST00000100521 1539 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Skap1-204ENSMUST00000103154 1507 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC17.45■□□□□ 0.38
Col9a1Q05722 Txndc15-201ENSMUST00000021959 1527 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Fam102b-202ENSMUST00000171143 5702 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Col9a1Q05722 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col9a1Q05722 Epb41l4b-201ENSMUST00000030142 3247 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col9a1Q05722 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.44■□□□□ 0.38
Col9a1Q05722 Rfwd2-201ENSMUST00000076894 5116 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col9a1Q05722 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.44■□□□□ 0.38
Col9a1Q05722 Gm15653-201ENSMUST00000119247 907 ntBASIC17.44■□□□□ 0.38
Col9a1Q05722 4931428L18Rik-202ENSMUST00000135245 889 ntAPPRIS P5 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col9a1Q05722 Tpt1-205ENSMUST00000142061 996 ntTSL 5 BASIC17.44■□□□□ 0.38
Col9a1Q05722 Smarca5-ps-202ENSMUST00000171805 1284 ntBASIC17.44■□□□□ 0.38
Col9a1Q05722 Urah-204ENSMUST00000185612 716 ntAPPRIS P3 TSL 3 BASIC17.44■□□□□ 0.38
Col9a1Q05722 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
Col9a1Q05722 AC153889.1-201ENSMUST00000219257 330 ntBASIC17.44■□□□□ 0.38
Col9a1Q05722 Mrpl36-203ENSMUST00000222030 680 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
Col9a1Q05722 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col9a1Q05722 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col9a1Q05722 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Col9a1Q05722 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC17.44■□□□□ 0.38
Col9a1Q05722 Whrn-202ENSMUST00000063672 2804 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Col9a1Q05722 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 30.3 ms