Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Insl6-201ENSMUST00000052380 708 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Sema6d-203ENSMUST00000077847 6444 ntTSL 5 BASIC19.65■□□□□ 0.74
Col6a1Q04857 Prkg2-201ENSMUST00000031277 2618 ntTSL 5 BASIC19.65■□□□□ 0.74
Col6a1Q04857 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Gm5540-201ENSMUST00000131852 1848 ntBASIC19.65■□□□□ 0.74
Col6a1Q04857 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Col6a1Q04857 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
Col6a1Q04857 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col6a1Q04857 Nphp3-201ENSMUST00000035167 5899 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
Col6a1Q04857 Gm38342-201ENSMUST00000195710 2980 ntBASIC19.64■□□□□ 0.73
Col6a1Q04857 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col6a1Q04857 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col6a1Q04857 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col6a1Q04857 Josd2-206ENSMUST00000121922 684 ntTSL 5 BASIC19.64■□□□□ 0.73
Col6a1Q04857 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col6a1Q04857 Mir5130-201ENSMUST00000175160 84 ntBASIC19.64■□□□□ 0.73
Col6a1Q04857 Olfr279-201ENSMUST00000050451 933 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Col6a1Q04857 Pym1-201ENSMUST00000065210 1156 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col6a1Q04857 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Col6a1Q04857 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Col6a1Q04857 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Col6a1Q04857 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Col6a1Q04857 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col6a1Q04857 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col6a1Q04857 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col6a1Q04857 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Col6a1Q04857 Plekhm2-202ENSMUST00000084203 4136 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
Col6a1Q04857 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col6a1Q04857 Josd2-203ENSMUST00000118493 922 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Col6a1Q04857 Gm15952-201ENSMUST00000122858 490 ntTSL 3 BASIC19.63■□□□□ 0.73
Col6a1Q04857 Gm17661-201ENSMUST00000170317 270 ntBASIC19.63■□□□□ 0.73
Col6a1Q04857 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Col6a1Q04857 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Col6a1Q04857 AC134329.2-201ENSMUST00000217897 428 ntBASIC19.63■□□□□ 0.73
Col6a1Q04857 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC19.63■□□□□ 0.73
Col6a1Q04857 Dennd3-201ENSMUST00000043414 5299 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col6a1Q04857 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col6a1Q04857 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col6a1Q04857 Gm7284-201ENSMUST00000131667 944 ntBASIC19.62■□□□□ 0.73
Col6a1Q04857 Psmd13-209ENSMUST00000164681 726 ntTSL 5 BASIC19.62■□□□□ 0.73
Col6a1Q04857 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col6a1Q04857 Cmtm7-202ENSMUST00000084867 874 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Col6a1Q04857 Ruvbl1-201ENSMUST00000032165 1675 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col6a1Q04857 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.62■□□□□ 0.73
Col6a1Q04857 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Col6a1Q04857 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Col6a1Q04857 Cyb5a-204ENSMUST00000160180 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Arid1b-201ENSMUST00000092723 7150 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Col6a1Q04857 Uqcc2-203ENSMUST00000119227 452 ntTSL 3 BASIC19.61■□□□□ 0.73
Col6a1Q04857 4930544I03Rik-201ENSMUST00000181184 1276 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.61■□□□□ 0.73
Col6a1Q04857 Gm45631-201ENSMUST00000210318 1244 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Hint2-201ENSMUST00000030192 610 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Ntpcr-201ENSMUST00000034313 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Mrps6-201ENSMUST00000047429 846 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Nadk2-201ENSMUST00000067760 3731 ntAPPRIS P5 TSL 5 BASIC19.61■□□□□ 0.73
Col6a1Q04857 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Col6a1Q04857 Gm26860-201ENSMUST00000181674 1489 ntTSL 5 BASIC19.6■□□□□ 0.73
Col6a1Q04857 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC19.6■□□□□ 0.73
Col6a1Q04857 Rncr4-201ENSMUST00000194541 2234 ntBASIC19.6■□□□□ 0.73
Col6a1Q04857 Gm37352-201ENSMUST00000193908 2181 ntBASIC19.6■□□□□ 0.73
Col6a1Q04857 Srp68-201ENSMUST00000021133 2526 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC19.6■□□□□ 0.73
Col6a1Q04857 Spc24-205ENSMUST00000217382 1696 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Pld6-202ENSMUST00000125307 948 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 C030037D09Rik-202ENSMUST00000136201 1216 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Gm25016-201ENSMUST00000158399 131 ntBASIC19.6■□□□□ 0.73
Col6a1Q04857 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.6■□□□□ 0.73
Col6a1Q04857 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 AC124603.1-201ENSMUST00000223843 308 ntBASIC19.6■□□□□ 0.73
Col6a1Q04857 2700046G09Rik-201ENSMUST00000181612 1641 ntTSL 2 BASIC19.6■□□□□ 0.73
Col6a1Q04857 Dpf1-203ENSMUST00000108230 1553 ntTSL 5 BASIC19.6■□□□□ 0.73
Col6a1Q04857 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Gabarapl1-201ENSMUST00000032264 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Eva1a-201ENSMUST00000042974 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
Col6a1Q04857 Chpt1-203ENSMUST00000117440 4863 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Col6a1Q04857 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col6a1Q04857 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col6a1Q04857 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col6a1Q04857 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col6a1Q04857 5430402O13Rik-201ENSMUST00000126537 869 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Col6a1Q04857 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC19.59■□□□□ 0.73
Col6a1Q04857 Gm43353-201ENSMUST00000199224 1295 ntBASIC19.59■□□□□ 0.73
Col6a1Q04857 Rpl39l-201ENSMUST00000044103 805 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Col6a1Q04857 Gm7461-201ENSMUST00000058918 827 ntBASIC19.59■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms