Protein–RNA interactions for Protein: P97386

Lig3, DNA ligase 3, mousemouse

Predictions only

Length 1,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lig3P97386 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Lig3P97386 Smap1-201ENSMUST00000027339 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
Lig3P97386 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Gm2399-201ENSMUST00000104944 225 ntBASIC19.37■□□□□ 0.69
Lig3P97386 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Lig3P97386 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC19.37■□□□□ 0.69
Lig3P97386 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC19.37■□□□□ 0.69
Lig3P97386 Qdpr-208ENSMUST00000197946 1206 ntTSL 5 BASIC19.37■□□□□ 0.69
Lig3P97386 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
Lig3P97386 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC19.37■□□□□ 0.69
Lig3P97386 Gm10819-201ENSMUST00000099988 561 ntBASIC19.37■□□□□ 0.69
Lig3P97386 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Lig3P97386 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lig3P97386 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Lig3P97386 Gm10167-201ENSMUST00000150411 1479 ntBASIC19.36■□□□□ 0.69
Lig3P97386 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC19.36■□□□□ 0.69
Lig3P97386 Ets1-201ENSMUST00000034534 5080 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lig3P97386 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lig3P97386 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC19.36■□□□□ 0.69
Lig3P97386 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lig3P97386 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lig3P97386 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
Lig3P97386 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
Lig3P97386 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Lig3P97386 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Lig3P97386 Acbd3-201ENSMUST00000027780 3471 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
Lig3P97386 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC19.35■□□□□ 0.69
Lig3P97386 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Acss2-202ENSMUST00000065973 2876 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Ankrd17-214ENSMUST00000218526 4938 ntTSL 5 BASIC19.35■□□□□ 0.69
Lig3P97386 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Gm21362-201ENSMUST00000194272 928 ntBASIC19.35■□□□□ 0.69
Lig3P97386 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
Lig3P97386 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.35■□□□□ 0.69
Lig3P97386 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Ncoa5-203ENSMUST00000122070 3117 ntTSL 5 BASIC19.35■□□□□ 0.69
Lig3P97386 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC19.35■□□□□ 0.69
Lig3P97386 Raver2-201ENSMUST00000038463 4045 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
Lig3P97386 Cables1-201ENSMUST00000046948 3202 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 Hnrnpul2-201ENSMUST00000096753 5726 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC19.34■□□□□ 0.69
Lig3P97386 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 Mir5122-201ENSMUST00000175004 89 ntBASIC19.34■□□□□ 0.69
Lig3P97386 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 Eif3h-201ENSMUST00000022925 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
Lig3P97386 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Lig3P97386 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lig3P97386 Ptpdc1-204ENSMUST00000222028 3164 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lig3P97386 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Lig3P97386 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC19.33■□□□□ 0.69
Lig3P97386 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig3P97386 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig3P97386 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig3P97386 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Lig3P97386 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig3P97386 Zbtb24-201ENSMUST00000080771 2844 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Lig3P97386 Gm43702-201ENSMUST00000198772 2546 ntBASIC19.32■□□□□ 0.68
Lig3P97386 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 1700018L02Rik-201ENSMUST00000187897 2485 ntBASIC19.32■□□□□ 0.68
Lig3P97386 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Lig3P97386 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Gm13158-201ENSMUST00000122007 736 ntBASIC19.32■□□□□ 0.68
Lig3P97386 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC19.32■□□□□ 0.68
Lig3P97386 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Ptgfrn-201ENSMUST00000102694 5902 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Lig3P97386 Slc22a3-201ENSMUST00000024595 3501 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Lig3P97386 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Lig3P97386 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 23.7 ms