Protein–RNA interactions for Protein: P48381

Rfx3, Transcription factor RFX3, mousemouse

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx3P48381 Gm38308-201ENSMUST00000194934 1809 ntBASIC16.1■□□□□ 0.17
Rfx3P48381 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC16.1■□□□□ 0.17
Rfx3P48381 Ric1-201ENSMUST00000043610 7190 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Rfx3P48381 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Sgsm1-204ENSMUST00000112325 2274 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Rfx3P48381 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Rfx3P48381 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC16.1■□□□□ 0.17
Rfx3P48381 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
Rfx3P48381 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC16.1■□□□□ 0.17
Rfx3P48381 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Rfx3P48381 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Rasl10b-204ENSMUST00000175848 3249 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Rfx3P48381 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Sntg2-201ENSMUST00000021004 2411 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Tfap2a-208ENSMUST00000224999 2058 ntAPPRIS ALT1 BASIC16.09■□□□□ 0.17
Rfx3P48381 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Lrrfip2-202ENSMUST00000098340 3191 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Scly-201ENSMUST00000027532 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Map4k5-210ENSMUST00000171211 4334 ntTSL 2 BASIC16.09■□□□□ 0.17
Rfx3P48381 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC16.09■□□□□ 0.17
Rfx3P48381 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.09■□□□□ 0.17
Rfx3P48381 Gm5297-201ENSMUST00000198555 1171 ntBASIC16.09■□□□□ 0.17
Rfx3P48381 Gm8969-201ENSMUST00000199694 526 ntBASIC16.09■□□□□ 0.17
Rfx3P48381 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC16.09■□□□□ 0.17
Rfx3P48381 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Rfx3P48381 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Zswim8-201ENSMUST00000022358 6073 ntAPPRIS P2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Rfx3P48381 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Rfx3P48381 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Rfx3P48381 Fam109a-201ENSMUST00000056654 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Rfx3P48381 Fam135a-201ENSMUST00000027337 5536 ntAPPRIS P2 TSL 5 BASIC16.08■□□□□ 0.17
Rfx3P48381 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC16.08■□□□□ 0.17
Rfx3P48381 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Rfx3P48381 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Rfx3P48381 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rfx3P48381 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC16.08■□□□□ 0.16
Rfx3P48381 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Rfx3P48381 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC16.08■□□□□ 0.16
Rfx3P48381 Shroom3-204ENSMUST00000168878 5630 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Rfx3P48381 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.16
Rfx3P48381 Plekha7-210ENSMUST00000182834 5257 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Rfx3P48381 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
Rfx3P48381 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rfx3P48381 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rfx3P48381 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Rfx3P48381 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Rfx3P48381 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC16.07■□□□□ 0.16
Rfx3P48381 Kank3-201ENSMUST00000048560 2641 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
Rfx3P48381 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC16.07■□□□□ 0.16
Rfx3P48381 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC16.07■□□□□ 0.16
Rfx3P48381 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Kmt5c-201ENSMUST00000098853 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Gm45244-201ENSMUST00000211328 2200 ntBASIC16.07■□□□□ 0.16
Rfx3P48381 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Ostm1-201ENSMUST00000040718 3006 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Rfx3P48381 Zfp512b-201ENSMUST00000108789 5714 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 P2rx5-201ENSMUST00000006104 2395 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Rfx3P48381 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
Rfx3P48381 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 a-201ENSMUST00000029123 731 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 Vax2-201ENSMUST00000037807 1242 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC16.06■□□□□ 0.16
Rfx3P48381 Ythdc1-203ENSMUST00000120498 3269 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Rfx3P48381 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
Rfx3P48381 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 Bpifb4-203ENSMUST00000109759 2115 ntAPPRIS P2 TSL 5 BASIC16.06■□□□□ 0.16
Rfx3P48381 Myo5a-214ENSMUST00000155282 6372 ntAPPRIS P5 TSL 5 BASIC16.06■□□□□ 0.16
Rfx3P48381 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC16.06■□□□□ 0.16
Rfx3P48381 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Rfx3P48381 Ank1-209ENSMUST00000121802 8218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Ube2cbp-201ENSMUST00000034986 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Apbb1-214ENSMUST00000189378 2878 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Rfx3P48381 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Rfx3P48381 Coq8b-202ENSMUST00000108378 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 20 ms