Protein–RNA interactions for Protein: P35123

Usp4, Ubiquitin carboxyl-terminal hydrolase 4, mousemouse

Predictions only

Length 962 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp4P35123 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp4P35123 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.66■□□□□ 0.58
Usp4P35123 Rassf1-201ENSMUST00000010211 1727 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Usp4P35123 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Usp4P35123 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
Usp4P35123 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 Jag1-201ENSMUST00000028735 5612 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC18.65■□□□□ 0.58
Usp4P35123 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.65■□□□□ 0.58
Usp4P35123 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 Hist1h2ap-201ENSMUST00000081342 482 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
Usp4P35123 Donson-201ENSMUST00000023682 2360 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 6430573F11Rik-202ENSMUST00000135373 2573 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Usp4P35123 Zbtb9-201ENSMUST00000120016 2798 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp4P35123 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Usp4P35123 Tbxas1-201ENSMUST00000003017 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
Usp4P35123 Mcl1-201ENSMUST00000037947 3418 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp4P35123 Adam15-203ENSMUST00000107446 1686 ntTSL 5 BASIC18.64■□□□□ 0.57
Usp4P35123 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp4P35123 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Usp4P35123 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp4P35123 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.64■□□□□ 0.57
Usp4P35123 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp4P35123 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp4P35123 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
Usp4P35123 Psen2-202ENSMUST00000111104 1475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp4P35123 Cxcl14-202ENSMUST00000224801 1467 ntBASIC18.64■□□□□ 0.57
Usp4P35123 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp4P35123 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Usp4P35123 Gnb2-204ENSMUST00000111027 1610 ntTSL 5 BASIC18.63■□□□□ 0.57
Usp4P35123 Icmt-201ENSMUST00000048892 4919 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp4P35123 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp4P35123 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Usp4P35123 Hsp25-ps1-201ENSMUST00000109187 630 ntBASIC18.63■□□□□ 0.57
Usp4P35123 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Usp4P35123 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp4P35123 A530084C06Rik-201ENSMUST00000170573 3200 ntAPPRIS P1 BASIC18.63■□□□□ 0.57
Usp4P35123 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.63■□□□□ 0.57
Usp4P35123 Csnk1a1-206ENSMUST00000165721 2323 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp4P35123 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC18.63■□□□□ 0.57
Usp4P35123 Diablo-203ENSMUST00000111587 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Usp4P35123 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Scaf8-201ENSMUST00000076734 4869 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
Usp4P35123 Hspa8-201ENSMUST00000015800 2394 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Tle4-202ENSMUST00000167776 4545 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
Usp4P35123 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC18.62■□□□□ 0.57
Usp4P35123 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC18.62■□□□□ 0.57
Usp4P35123 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.62■□□□□ 0.57
Usp4P35123 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Usp4P35123 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Usp4P35123 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC18.62■□□□□ 0.57
Usp4P35123 Gm16432-201ENSMUST00000094273 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Gjb3-201ENSMUST00000046532 1880 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC18.62■□□□□ 0.57
Usp4P35123 Pdx1-201ENSMUST00000085591 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Senp3-202ENSMUST00000066760 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Fam69a-201ENSMUST00000031198 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Usp4P35123 Khsrp-201ENSMUST00000007814 3990 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Nelfb-201ENSMUST00000059849 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Fam53a-201ENSMUST00000045329 2346 ntAPPRIS P2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Flot1-201ENSMUST00000001569 1825 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Gm44210-201ENSMUST00000205253 713 ntTSL 3 BASIC18.61■□□□□ 0.57
Usp4P35123 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
Usp4P35123 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Taf6l-205ENSMUST00000176496 2224 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.61■□□□□ 0.57
Usp4P35123 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Usp4P35123 Cdc14b-203ENSMUST00000109770 3052 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp4P35123 Ptpa-202ENSMUST00000113601 1838 ntTSL 5 BASIC18.6■□□□□ 0.57
Usp4P35123 Tfdp2-209ENSMUST00000188750 1713 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Usp4P35123 Txndc5-201ENSMUST00000035988 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp4P35123 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp4P35123 Atf7-209ENSMUST00000184485 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp4P35123 Atxn7l2-202ENSMUST00000117409 2321 ntAPPRIS ALT2 TSL 5 BASIC18.6■□□□□ 0.57
Usp4P35123 Usp21-202ENSMUST00000111305 2278 ntAPPRIS P2 TSL 5 BASIC18.6■□□□□ 0.57
Usp4P35123 Hnrnph1-201ENSMUST00000069304 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp4P35123 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Usp4P35123 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.6■□□□□ 0.57
Usp4P35123 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Usp4P35123 Mir5133-201ENSMUST00000174955 77 ntBASIC18.6■□□□□ 0.57
Usp4P35123 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms