Protein–RNA interactions for Protein: P25318

Col8a2, Collagen alpha-2(VIII) chain, mousemouse

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a2P25318 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a2P25318 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Col8a2P25318 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC14.87□□□□□ -0.03
Col8a2P25318 Vegfc-201ENSMUST00000033919 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 A330009N23Rik-201ENSMUST00000180639 1392 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Zfp623-201ENSMUST00000037260 2463 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Zfp78-205ENSMUST00000208030 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Samd8-201ENSMUST00000022292 1574 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Trmo-202ENSMUST00000086563 1554 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Gm16127-201ENSMUST00000131619 234 ntTSL 5 BASIC14.87□□□□□ -0.03
Col8a2P25318 Mir7071-201ENSMUST00000184847 69 ntBASIC14.87□□□□□ -0.03
Col8a2P25318 Gm29241-201ENSMUST00000189260 1096 ntBASIC14.87□□□□□ -0.03
Col8a2P25318 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC14.87□□□□□ -0.03
Col8a2P25318 F2rl3-201ENSMUST00000058099 1751 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC14.87□□□□□ -0.03
Col8a2P25318 Snx15-201ENSMUST00000025702 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC14.87□□□□□ -0.03
Col8a2P25318 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Col8a2P25318 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC14.87□□□□□ -0.03
Col8a2P25318 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Col8a2P25318 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC14.86□□□□□ -0.03
Col8a2P25318 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 Cdan1-202ENSMUST00000110701 6384 ntAPPRIS P2 TSL 5 BASIC14.86□□□□□ -0.03
Col8a2P25318 Trmt61a-201ENSMUST00000084947 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Col8a2P25318 Hcn2-202ENSMUST00000099513 3195 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 Siglecf-206ENSMUST00000206299 2149 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC14.86□□□□□ -0.03
Col8a2P25318 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC14.86□□□□□ -0.03
Col8a2P25318 Gm37055-201ENSMUST00000191866 133 ntBASIC14.86□□□□□ -0.03
Col8a2P25318 Hsbp1-202ENSMUST00000212468 638 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
Col8a2P25318 AC166341.7-201ENSMUST00000221698 126 ntBASIC14.86□□□□□ -0.03
Col8a2P25318 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC14.86□□□□□ -0.03
Col8a2P25318 AC108858.1-201ENSMUST00000228461 1498 ntBASIC14.86□□□□□ -0.03
Col8a2P25318 Prcc-201ENSMUST00000005015 2099 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Col8a2P25318 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Col8a2P25318 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC14.85□□□□□ -0.03
Col8a2P25318 Anks1b-208ENSMUST00000182053 1649 ntTSL 5 BASIC14.85□□□□□ -0.03
Col8a2P25318 Prkra-201ENSMUST00000002808 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Noxa1-201ENSMUST00000044018 1617 ntAPPRIS P3 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Otud7a-201ENSMUST00000058476 3483 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 A930024E05Rik-201ENSMUST00000148466 1896 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Nkx2-2-203ENSMUST00000109970 1053 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 E030044B06Rik-201ENSMUST00000181195 1266 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Gabarapl1-202ENSMUST00000204487 902 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC14.85□□□□□ -0.03
Col8a2P25318 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC14.85□□□□□ -0.03
Col8a2P25318 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC14.85□□□□□ -0.03
Col8a2P25318 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Nadk2-202ENSMUST00000100789 3578 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Col8a2P25318 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Rbm11-202ENSMUST00000114249 2750 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
Col8a2P25318 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
Col8a2P25318 Cyp2r1-201ENSMUST00000032908 1627 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Tekt1-201ENSMUST00000021155 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC14.84□□□□□ -0.03
Col8a2P25318 Insm1-201ENSMUST00000089257 3100 ntAPPRIS P1 BASIC14.84□□□□□ -0.03
Col8a2P25318 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Mmp11-201ENSMUST00000000924 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC14.84□□□□□ -0.03
Col8a2P25318 Sap18-201ENSMUST00000111267 660 ntTSL 2 BASIC14.84□□□□□ -0.03
Col8a2P25318 Mir5122-201ENSMUST00000175004 89 ntBASIC14.84□□□□□ -0.03
Col8a2P25318 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Gm16042-201ENSMUST00000204813 1247 ntBASIC14.84□□□□□ -0.03
Col8a2P25318 Otx2os1-204ENSMUST00000227221 751 ntBASIC14.84□□□□□ -0.03
Col8a2P25318 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Ly6g6d-201ENSMUST00000007259 546 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC14.84□□□□□ -0.03
Col8a2P25318 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col8a2P25318 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.03
Col8a2P25318 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 45.2 ms