Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Timm8a2-201ENSMUST00000045976 913 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Stat5b-201ENSMUST00000004143 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col1a1P11087 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col1a1P11087 4933427J07Rik-201ENSMUST00000156275 1533 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col1a1P11087 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col1a1P11087 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC20.92■□□□□ 0.94
Col1a1P11087 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col1a1P11087 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Col1a1P11087 Gm11950-201ENSMUST00000121615 838 ntBASIC20.92■□□□□ 0.94
Col1a1P11087 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
Col1a1P11087 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Col1a1P11087 Krt27-201ENSMUST00000017732 1550 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Col1a1P11087 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
Col1a1P11087 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col1a1P11087 Doc2g-201ENSMUST00000025806 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col1a1P11087 Snrpd2-201ENSMUST00000049294 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col1a1P11087 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col1a1P11087 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col1a1P11087 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC20.91■□□□□ 0.94
Col1a1P11087 Gm11355-201ENSMUST00000121120 306 ntBASIC20.91■□□□□ 0.94
Col1a1P11087 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col1a1P11087 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
Col1a1P11087 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC20.91■□□□□ 0.94
Col1a1P11087 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
Col1a1P11087 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
Col1a1P11087 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Col1a1P11087 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col1a1P11087 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC20.9■□□□□ 0.94
Col1a1P11087 Gfod2-203ENSMUST00000155038 951 ntTSL 2 BASIC20.9■□□□□ 0.94
Col1a1P11087 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
Col1a1P11087 Rpl36al-201ENSMUST00000054544 526 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col1a1P11087 BC021767-201ENSMUST00000126387 1716 ntBASIC20.9■□□□□ 0.94
Col1a1P11087 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
Col1a1P11087 Rpp25-201ENSMUST00000080514 1423 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
Col1a1P11087 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.9■□□□□ 0.94
Col1a1P11087 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col1a1P11087 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
Col1a1P11087 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.94
Col1a1P11087 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
Col1a1P11087 Gm18958-201ENSMUST00000174258 762 ntBASIC20.89■□□□□ 0.94
Col1a1P11087 Gm29791-202ENSMUST00000207888 369 ntBASIC20.89■□□□□ 0.94
Col1a1P11087 Flt3l-206ENSMUST00000210197 834 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
Col1a1P11087 Pgrmc2-201ENSMUST00000058578 3007 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col1a1P11087 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
Col1a1P11087 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col1a1P11087 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col1a1P11087 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
Col1a1P11087 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
Col1a1P11087 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col1a1P11087 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col1a1P11087 Prss53-202ENSMUST00000205300 1662 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
Col1a1P11087 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC20.88■□□□□ 0.93
Col1a1P11087 Gm10358-201ENSMUST00000212864 1250 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
Col1a1P11087 Gm45447-201ENSMUST00000209874 1805 ntTSL 5 BASIC20.88■□□□□ 0.93
Col1a1P11087 Hoxb2-201ENSMUST00000100523 1628 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col1a1P11087 Acot2-201ENSMUST00000021649 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col1a1P11087 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
Col1a1P11087 Gm38308-201ENSMUST00000194934 1809 ntBASIC20.88■□□□□ 0.93
Col1a1P11087 1110065P20Rik-204ENSMUST00000163946 762 ntTSL 2 BASIC20.88■□□□□ 0.93
Col1a1P11087 Ahnak-201ENSMUST00000092955 1046 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
Col1a1P11087 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
Col1a1P11087 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 1700041G16Rik-202ENSMUST00000186344 1824 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 Galnt11-201ENSMUST00000045737 2552 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 Nat8f3-202ENSMUST00000168531 1347 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 Fgf8-205ENSMUST00000111927 843 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
Col1a1P11087 4930526A20Rik-201ENSMUST00000134228 941 ntBASIC20.87■□□□□ 0.93
Col1a1P11087 Fdps-203ENSMUST00000196709 1382 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
Col1a1P11087 Glrb-201ENSMUST00000029654 3029 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col1a1P11087 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col1a1P11087 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col1a1P11087 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col1a1P11087 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col1a1P11087 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col1a1P11087 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col1a1P11087 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Col1a1P11087 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Cdk4-201ENSMUST00000006911 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Eme2-202ENSMUST00000121542 1521 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Cyp4f41-ps-201ENSMUST00000126790 1077 ntBASIC20.85■□□□□ 0.93
Col1a1P11087 Gm44771-201ENSMUST00000206975 626 ntBASIC20.85■□□□□ 0.93
Col1a1P11087 BC048679-203ENSMUST00000207871 567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Gm31727-201ENSMUST00000210102 360 ntTSL 3 BASIC20.85■□□□□ 0.93
Col1a1P11087 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Col1a1P11087 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
Col1a1P11087 Notumos-201ENSMUST00000151998 2659 ntBASIC20.84■□□□□ 0.93
Col1a1P11087 Bud23-202ENSMUST00000085984 1516 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Col1a1P11087 Slc30a1-201ENSMUST00000044954 5244 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms