Protein–RNA interactions for Protein: O88544

Cops4, COP9 signalosome complex subunit 4, mousemouse

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cops4O88544 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Rpusd3-204ENSMUST00000129047 1045 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Cmc4-201ENSMUST00000033543 992 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Rpusd3-201ENSMUST00000060634 1224 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Zfp428-201ENSMUST00000071361 1182 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC16.46■□□□□ 0.23
Cops4O88544 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Cux1-206ENSMUST00000176172 4882 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
Cops4O88544 Sh3bp1-201ENSMUST00000001226 2510 ntTSL 5 BASIC16.46■□□□□ 0.22
Cops4O88544 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cops4O88544 Mapkapk3-201ENSMUST00000035194 2816 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
Cops4O88544 Gm43808-201ENSMUST00000202534 2065 ntBASIC16.46■□□□□ 0.22
Cops4O88544 A430057M04Rik-202ENSMUST00000170150 2176 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Esyt2-205ENSMUST00000220816 4287 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Zdhhc1-201ENSMUST00000044286 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Ykt6-201ENSMUST00000002818 2541 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC16.45■□□□□ 0.22
Cops4O88544 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Gm43060-201ENSMUST00000200621 289 ntBASIC16.45■□□□□ 0.22
Cops4O88544 0610010K14Rik-202ENSMUST00000021181 779 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
Cops4O88544 Epdr1-204ENSMUST00000221014 692 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.45■□□□□ 0.22
Cops4O88544 Dhx30-224ENSMUST00000200066 4623 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Lmbr1-207ENSMUST00000200564 1598 ntTSL 5 BASIC16.45■□□□□ 0.22
Cops4O88544 Atxn7l2-204ENSMUST00000119650 2274 ntTSL 5 BASIC16.45■□□□□ 0.22
Cops4O88544 Xpr1-202ENSMUST00000111774 2753 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Fezf1-201ENSMUST00000031709 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Ptges2-201ENSMUST00000028162 4978 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Esx1-201ENSMUST00000074698 1600 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
Cops4O88544 Npnt-202ENSMUST00000042744 4619 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Rnf146-202ENSMUST00000160144 4323 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Rasal2-201ENSMUST00000078308 10047 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC16.44■□□□□ 0.22
Cops4O88544 Egln2-202ENSMUST00000108382 1756 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cops4O88544 Kdm2a-202ENSMUST00000075856 7242 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
Cops4O88544 Strn-203ENSMUST00000145910 8629 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Stau2-203ENSMUST00000115359 1151 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Snhg20-202ENSMUST00000149822 593 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Gm27032-201ENSMUST00000183124 1116 ntBASIC16.44■□□□□ 0.22
Cops4O88544 Pet117-201ENSMUST00000183618 693 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Cops4O88544 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
Cops4O88544 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Casp9-201ENSMUST00000030747 3897 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Cops4O88544 Arpc2-202ENSMUST00000113819 1313 ntTSL 5 BASIC16.44■□□□□ 0.22
Cops4O88544 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Ikzf1-203ENSMUST00000065433 4697 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cops4O88544 Zfp746-201ENSMUST00000073124 3651 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.43■□□□□ 0.22
Cops4O88544 Chmp2b-201ENSMUST00000004965 1838 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Slc6a8-204ENSMUST00000114467 2509 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC16.43■□□□□ 0.22
Cops4O88544 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC16.43■□□□□ 0.22
Cops4O88544 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC16.43■□□□□ 0.22
Cops4O88544 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Mob2-205ENSMUST00000211000 1646 ntTSL 5 BASIC16.43■□□□□ 0.22
Cops4O88544 Epn1-201ENSMUST00000045277 2334 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Zic1-201ENSMUST00000034927 5606 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Meis2-202ENSMUST00000074285 2844 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Cnn2-201ENSMUST00000004784 2460 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Bmp8a-201ENSMUST00000040496 2405 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
Cops4O88544 Cadps2-212ENSMUST00000163871 4969 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
Cops4O88544 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Gopc-202ENSMUST00000105475 4317 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
Cops4O88544 C230012O17Rik-201ENSMUST00000130085 2999 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC16.42■□□□□ 0.22
Cops4O88544 Prdm6-201ENSMUST00000091900 2601 ntAPPRIS P2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Krt6a-201ENSMUST00000023788 2256 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Yipf3-201ENSMUST00000095263 2035 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Ncoa5-201ENSMUST00000040381 3179 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC16.42■□□□□ 0.22
Cops4O88544 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Synpo-205ENSMUST00000130044 4970 ntAPPRIS P3 TSL 2 BASIC16.42■□□□□ 0.22
Cops4O88544 Marc2-201ENSMUST00000068725 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Adnp-202ENSMUST00000088001 4932 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Rhobtb2-201ENSMUST00000022665 5322 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
Cops4O88544 Ttc6-203ENSMUST00000172939 5782 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
Cops4O88544 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
Cops4O88544 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Cops4O88544 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
Cops4O88544 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Cops4O88544 A830018L16Rik-208ENSMUST00000171690 6158 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
Cops4O88544 Abtb1-201ENSMUST00000032169 1845 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
Cops4O88544 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC16.41■□□□□ 0.22
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms