Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC17.49■□□□□ 0.39
Chd3B1AR17 Cep57-209ENSMUST00000148086 2467 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC17.49■□□□□ 0.39
Chd3B1AR17 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC17.49■□□□□ 0.39
Chd3B1AR17 Odf3b-204ENSMUST00000227834 930 ntBASIC17.49■□□□□ 0.39
Chd3B1AR17 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Tollip-202ENSMUST00000055819 1100 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC17.49■□□□□ 0.39
Chd3B1AR17 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Serbp1-203ENSMUST00000203077 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.49■□□□□ 0.39
Chd3B1AR17 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Hs6st1-201ENSMUST00000088174 3719 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Tnk1-202ENSMUST00000108626 1798 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Arhgap35-201ENSMUST00000075845 9147 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Necab3-202ENSMUST00000109716 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Rbms1-209ENSMUST00000164147 2543 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
Chd3B1AR17 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC17.48■□□□□ 0.39
Chd3B1AR17 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Chd3B1AR17 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Chd3B1AR17 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Chd3B1AR17 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC17.48■□□□□ 0.39
Chd3B1AR17 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Chd3B1AR17 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Chd3B1AR17 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.48■□□□□ 0.39
Chd3B1AR17 Casp3-203ENSMUST00000210534 583 ntTSL 5 BASIC17.48■□□□□ 0.39
Chd3B1AR17 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Tada2b-201ENSMUST00000031097 3791 ntAPPRIS P1 TSL 2 BASIC17.47■□□□□ 0.39
Chd3B1AR17 Slc47a2-201ENSMUST00000093029 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Chd3B1AR17 Fam126a-202ENSMUST00000101513 1679 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 2900052L18Rik-201ENSMUST00000139014 1588 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Apbb1-219ENSMUST00000191601 2690 ntAPPRIS P4 TSL 5 BASIC17.46■□□□□ 0.39
Chd3B1AR17 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC17.46■□□□□ 0.39
Chd3B1AR17 Gm10418-201ENSMUST00000100943 576 ntBASIC17.46■□□□□ 0.39
Chd3B1AR17 AC166341.7-201ENSMUST00000221698 126 ntBASIC17.46■□□□□ 0.39
Chd3B1AR17 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Chd3B1AR17 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Ccdc91-201ENSMUST00000032441 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC17.46■□□□□ 0.39
Chd3B1AR17 Dgke-202ENSMUST00000107894 8347 ntAPPRIS P1 TSL 5 BASIC17.46■□□□□ 0.39
Chd3B1AR17 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.46■□□□□ 0.39
Chd3B1AR17 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
Chd3B1AR17 Pex14-201ENSMUST00000103217 2006 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Chd3B1AR17 Kctd13-201ENSMUST00000032924 1676 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.38
Chd3B1AR17 AC123834.2-201ENSMUST00000224038 2340 ntBASIC17.45■□□□□ 0.38
Chd3B1AR17 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
Chd3B1AR17 Echdc2-204ENSMUST00000116309 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Rcbtb2-217ENSMUST00000167401 868 ntTSL 5 BASIC17.45■□□□□ 0.38
Chd3B1AR17 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC17.45■□□□□ 0.38
Chd3B1AR17 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.45■□□□□ 0.38
Chd3B1AR17 Idnk-204ENSMUST00000226010 1898 ntBASIC17.45■□□□□ 0.38
Chd3B1AR17 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Sqor-201ENSMUST00000005953 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
Chd3B1AR17 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.45■□□□□ 0.38
Chd3B1AR17 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC17.44■□□□□ 0.38
Chd3B1AR17 Wisp2-201ENSMUST00000029188 1719 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Tha1-201ENSMUST00000033230 1770 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 2810408A11Rik-201ENSMUST00000018714 1485 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
Chd3B1AR17 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC17.44■□□□□ 0.38
Chd3B1AR17 Gm11539-201ENSMUST00000119837 557 ntBASIC17.44■□□□□ 0.38
Chd3B1AR17 Gm13436-201ENSMUST00000120418 567 ntBASIC17.44■□□□□ 0.38
Retrieved 100 of 76,532 protein–RNA pairs in 24.4 ms