Protein–RNA interactions for Protein: A0A140LI48

Pcdhgb8, Protocadherin gamma subfamily B, 8, mousemouse

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhgb8A0A140LI48 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
Pcdhgb8A0A140LI48 Snx27-201ENSMUST00000029783 6261 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Pcdhgb8A0A140LI48 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
Pcdhgb8A0A140LI48 Crocc-203ENSMUST00000102491 6582 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
Pcdhgb8A0A140LI48 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Arhgap8-201ENSMUST00000006029 1527 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Ubac2-201ENSMUST00000039803 2139 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Gm27032-201ENSMUST00000183124 1116 ntBASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Orai3-201ENSMUST00000061587 1996 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Ctcf-201ENSMUST00000005841 3782 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Col11a2-203ENSMUST00000114255 5722 ntAPPRIS ALT2 TSL 5 BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Ap2a2-201ENSMUST00000003038 4646 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Pcdhgb8A0A140LI48 Crebl2-201ENSMUST00000046303 3629 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Pcdhgb8A0A140LI48 Ankrd17-203ENSMUST00000168058 9311 ntAPPRIS ALT2 TSL 5 BASIC16.08■□□□□ 0.17
Pcdhgb8A0A140LI48 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Pcdhgb8A0A140LI48 Atp8b1-201ENSMUST00000025482 6440 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Pcdhgb8A0A140LI48 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Dusp9-201ENSMUST00000019701 2722 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Pcdhgb8A0A140LI48 Fam107a-202ENSMUST00000120411 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Krt4-201ENSMUST00000023797 2132 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 CT025689.6-201ENSMUST00000224991 1104 ntBASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Ypel3-201ENSMUST00000038614 973 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Cxcl14-202ENSMUST00000224801 1467 ntBASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Arpc1a-201ENSMUST00000031625 1632 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Picalm-206ENSMUST00000207484 8209 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Thumpd3-201ENSMUST00000032398 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Trim67-202ENSMUST00000167588 8735 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
Pcdhgb8A0A140LI48 Cacna1h-205ENSMUST00000159610 8230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Cacna1h-201ENSMUST00000078496 8220 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Pea15a-202ENSMUST00000111247 2435 ntTSL 3 BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Zfp92-202ENSMUST00000086470 2050 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Rnf157-201ENSMUST00000100202 4619 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Nrm-201ENSMUST00000074259 1466 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Cacna1a-201ENSMUST00000121390 7926 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Bmi1-201ENSMUST00000028071 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Gm15743-202ENSMUST00000182690 1901 ntBASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
Pcdhgb8A0A140LI48 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Xpo4-209ENSMUST00000174545 8680 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Cep68-204ENSMUST00000162811 2788 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Iqsec2-203ENSMUST00000112605 6017 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Rbl2-201ENSMUST00000034091 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Gsk3b-201ENSMUST00000023507 8303 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Tmem198-202ENSMUST00000113575 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 C130073E24Rik-201ENSMUST00000210222 6144 ntTSL 5 BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Mon1a-201ENSMUST00000035202 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Tle2-213ENSMUST00000146358 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Mmp14-201ENSMUST00000089688 2596 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Dscr3-201ENSMUST00000023615 2547 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Pcdhgb8A0A140LI48 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
Retrieved 100 of 76,532 protein–RNA pairs in 17.8 ms