Protein–RNA interactions for Protein: A0A0A6YWQ1

Trbv23, T cell receptor beta, variable V23 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trbv23A0A0A6YWQ1 Nrxn2-202ENSMUST00000113458 3503 ntTSL 5 BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Gm11696-201ENSMUST00000070956 2765 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Dcaf12l2-201ENSMUST00000115057 2885 ntAPPRIS P1 BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Smurf2-201ENSMUST00000092517 3125 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Edem1-201ENSMUST00000089162 5817 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
Trbv23A0A0A6YWQ1 Slc25a35-202ENSMUST00000102606 1828 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trbv23A0A0A6YWQ1 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Trbv23A0A0A6YWQ1 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Taok3-203ENSMUST00000111978 4467 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Sox14-201ENSMUST00000054819 2065 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 CT030146.1-201ENSMUST00000220919 217 ntBASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Klhdc8b-210ENSMUST00000193895 2718 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Pitx2-207ENSMUST00000174661 1942 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Slc7a5-201ENSMUST00000045557 3517 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Trbv23A0A0A6YWQ1 Lrch4-201ENSMUST00000031734 3078 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Il17re-208ENSMUST00000204774 2146 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Rraga-201ENSMUST00000091064 1618 ntAPPRIS P1 BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Ddhd1-201ENSMUST00000051310 5012 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Scube2-202ENSMUST00000106728 2890 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Sh2b3-201ENSMUST00000040308 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Map3k1-201ENSMUST00000109267 6978 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Tbp-202ENSMUST00000117593 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Cd5-201ENSMUST00000025571 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Mink1-205ENSMUST00000102559 4865 ntAPPRIS P4 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Klhdc9-201ENSMUST00000061878 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Trbv23A0A0A6YWQ1 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Apba1-201ENSMUST00000025830 6632 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm37166-201ENSMUST00000195473 2474 ntBASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm10493-201ENSMUST00000097270 612 ntBASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Pitpnm2-210ENSMUST00000162812 6952 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Hand1-201ENSMUST00000036917 1904 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Sco1-201ENSMUST00000092996 2412 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Trbv23A0A0A6YWQ1 Col15a1-202ENSMUST00000102917 5172 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Zfp668-203ENSMUST00000106262 3169 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Nploc4-202ENSMUST00000103017 4025 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Dok7-202ENSMUST00000101298 2443 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Aspscr1-204ENSMUST00000106159 1615 ntTSL 5 BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm7860-201ENSMUST00000121190 879 ntBASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm10129-202ENSMUST00000193100 1316 ntBASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm42778-201ENSMUST00000199644 553 ntBASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Mrpl40-201ENSMUST00000023391 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Echs1-201ENSMUST00000026538 1557 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Irak1-201ENSMUST00000033769 2890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Lsm1-201ENSMUST00000038421 2663 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Zfp446-202ENSMUST00000108535 2594 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Trbv23A0A0A6YWQ1 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv23A0A0A6YWQ1 Lonrf1-201ENSMUST00000065297 3930 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv23A0A0A6YWQ1 Dtwd2-203ENSMUST00000163590 2857 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv23A0A0A6YWQ1 Rab27b-202ENSMUST00000117692 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Trbv23A0A0A6YWQ1 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC15.29■□□□□ 0.04
Trbv23A0A0A6YWQ1 Cacna1b-202ENSMUST00000070864 9655 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 22.2 ms