Protein–RNA interactions for Protein: Q9Z0H3

Smarcb1, SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1, mousemouse

Predictions only

Length 385 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarcb1Q9Z0H3 Izumo2-201ENSMUST00000085422 632 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
Smarcb1Q9Z0H3 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC18.53■□□□□ 0.56
Smarcb1Q9Z0H3 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Snx3-202ENSMUST00000105499 1057 ntTSL 5 BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Dcxr-202ENSMUST00000106148 830 ntTSL 2 BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Dnajb3-201ENSMUST00000119972 1051 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Gm43799-201ENSMUST00000201845 579 ntBASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Otx2os1-204ENSMUST00000227221 751 ntBASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Gzmd-201ENSMUST00000082093 964 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
Smarcb1Q9Z0H3 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
Smarcb1Q9Z0H3 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC18.52■□□□□ 0.55
Smarcb1Q9Z0H3 Asap2-203ENSMUST00000090834 5097 ntTSL 5 BASIC18.52■□□□□ 0.55
Smarcb1Q9Z0H3 Rundc3a-202ENSMUST00000107102 1837 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Dus1l-202ENSMUST00000106133 1762 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Gm20544-201ENSMUST00000174338 690 ntTSL 3 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Gm29791-202ENSMUST00000207888 369 ntBASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC18.51■□□□□ 0.55
Smarcb1Q9Z0H3 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Car2-201ENSMUST00000029078 1788 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Rusc2-201ENSMUST00000035645 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Wnk2-210ENSMUST00000162403 6147 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Gm9694-201ENSMUST00000193347 1189 ntBASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Gm7977-201ENSMUST00000193787 748 ntBASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Fuz-209ENSMUST00000208179 1164 ntTSL 5 BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Mrps33-201ENSMUST00000031978 1107 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.5■□□□□ 0.55
Smarcb1Q9Z0H3 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Zar1-201ENSMUST00000073528 1429 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Farsa-201ENSMUST00000003906 1826 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Tsfm-202ENSMUST00000120547 1271 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Gm9987-201ENSMUST00000069768 567 ntBASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Wdsub1-201ENSMUST00000028368 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Smarcb1Q9Z0H3 Lrrc27-202ENSMUST00000106104 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Gm26829-201ENSMUST00000180581 934 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Atrn-201ENSMUST00000028781 8745 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
Smarcb1Q9Z0H3 Fbxo7-203ENSMUST00000120344 1655 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smarcb1Q9Z0H3 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
Smarcb1Q9Z0H3 Atp6v1b1-206ENSMUST00000206911 1591 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Smarcb1Q9Z0H3 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Smarcb1Q9Z0H3 Patz1-203ENSMUST00000094471 2930 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 76,532 protein–RNA pairs in 42.7 ms