Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Gm6209-202ENSMUST00000194629 1506 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Kcns2-201ENSMUST00000072868 5456 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Nfatc3-201ENSMUST00000109308 5984 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Phf14-202ENSMUST00000115510 3353 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Exoc3l2-202ENSMUST00000137613 4016 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Ndufa12-204ENSMUST00000179990 566 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Gm44549-201ENSMUST00000208351 577 ntBASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Gm4675-202ENSMUST00000164755 2322 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Srf-201ENSMUST00000015749 4093 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Gm43859-201ENSMUST00000200075 1412 ntBASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Mtmr3-202ENSMUST00000109943 5674 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Prpf40aQ9R1C7 Atp2a2-201ENSMUST00000031423 4486 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Prpf40aQ9R1C7 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC19.65■□□□□ 0.74
Prpf40aQ9R1C7 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC19.65■□□□□ 0.74
Prpf40aQ9R1C7 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Prpf40aQ9R1C7 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Prpf40aQ9R1C7 AC121961.1-201ENSMUST00000218594 1779 ntBASIC19.65■□□□□ 0.74
Prpf40aQ9R1C7 Aldh5a1-201ENSMUST00000037615 5647 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Prpf40aQ9R1C7 Srsf11-202ENSMUST00000072875 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Gm45606-201ENSMUST00000209836 2795 ntBASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 AC140264.2-202ENSMUST00000218746 817 ntBASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Mdfic-202ENSMUST00000120512 1871 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Soat2-201ENSMUST00000023806 2213 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Rnf112-203ENSMUST00000102661 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Mirt1-201ENSMUST00000180489 5292 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Cpd-201ENSMUST00000021201 7946 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Prpf40aQ9R1C7 Lrig1-201ENSMUST00000032105 4831 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Iqsec2-202ENSMUST00000112604 5967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Npdc1-201ENSMUST00000055921 1412 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Tpd52l1-201ENSMUST00000000305 1308 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Gm29257-201ENSMUST00000186115 639 ntBASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Nfu1-201ENSMUST00000032060 948 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Lonrf2-202ENSMUST00000147695 6932 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Agbl5-209ENSMUST00000201225 2646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Zscan12-201ENSMUST00000053293 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Epn1-207ENSMUST00000208634 2127 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Prpf40aQ9R1C7 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Camsap3-207ENSMUST00000207712 2539 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Henmt1-202ENSMUST00000098680 1466 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Arhgef9-208ENSMUST00000128565 2285 ntTSL 5 BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Akain1-201ENSMUST00000169935 2296 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Tssk6-201ENSMUST00000050373 1335 ntAPPRIS P1 BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Man1c1-202ENSMUST00000054096 4715 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Gm12441-201ENSMUST00000121806 588 ntBASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Gm15648-201ENSMUST00000149681 778 ntTSL 5 BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Gm44672-201ENSMUST00000206944 1098 ntBASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Ulk1-201ENSMUST00000031490 5213 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Fst-202ENSMUST00000223640 2612 ntBASIC19.62■□□□□ 0.73
Prpf40aQ9R1C7 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Cmtm4-201ENSMUST00000179802 7734 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Ano10-206ENSMUST00000216670 2108 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Dscc1-202ENSMUST00000110231 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Gnao1-207ENSMUST00000138659 5526 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Rtkn-203ENSMUST00000121093 2597 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Dexi-203ENSMUST00000184863 2537 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Rsph6a-201ENSMUST00000035521 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Htr6-202ENSMUST00000105802 2341 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Prpf40aQ9R1C7 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 19.1 ms