Protein–RNA interactions for Protein: Q9ERP3

Trim54, Tripartite motif-containing protein 54, mousemouse

Predictions only

Length 366 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim54Q9ERP3 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Gm8668-201ENSMUST00000120559 1447 ntBASIC19.34■□□□□ 0.69
Trim54Q9ERP3 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim54Q9ERP3 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim54Q9ERP3 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC19.33■□□□□ 0.69
Trim54Q9ERP3 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
Trim54Q9ERP3 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim54Q9ERP3 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim54Q9ERP3 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim54Q9ERP3 Rpl18-ps2-201ENSMUST00000118863 567 ntBASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Gm11539-201ENSMUST00000119837 557 ntBASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Gm13436-201ENSMUST00000120418 567 ntBASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Arl4aos-201ENSMUST00000135883 748 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Ccdc58-202ENSMUST00000163352 970 ntTSL 3 BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Ccdc58-203ENSMUST00000164916 1096 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Notch4-201ENSMUST00000015612 6591 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Trim14-201ENSMUST00000046897 1429 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Nectin3-201ENSMUST00000023334 3062 ntAPPRIS P4 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim54Q9ERP3 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Dll3-201ENSMUST00000108315 2618 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Prss16-201ENSMUST00000006341 2155 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Gm13559-201ENSMUST00000120476 863 ntBASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Slc2a8-204ENSMUST00000153484 1168 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Uqcr11-201ENSMUST00000020372 445 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 AC153845.2-202ENSMUST00000213372 807 ntTSL 3 BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 9530068E07Rik-202ENSMUST00000109057 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Ntng1-204ENSMUST00000106571 1446 ntTSL 5 BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Ntng1-210ENSMUST00000138953 1443 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Gm9194-201ENSMUST00000220749 1447 ntBASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Swsap1-201ENSMUST00000053583 1838 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim54Q9ERP3 Oxct2b-201ENSMUST00000102648 1735 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Gm9885-202ENSMUST00000186234 2209 ntBASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 2210408F21Rik-208ENSMUST00000144612 450 ntTSL 3 BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Pfdn4-201ENSMUST00000063682 935 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Cd248-201ENSMUST00000070630 2560 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
Trim54Q9ERP3 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim54Q9ERP3 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim54Q9ERP3 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
Trim54Q9ERP3 Ccnd2-204ENSMUST00000201637 1006 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim54Q9ERP3 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Trim54Q9ERP3 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC19.3■□□□□ 0.68
Trim54Q9ERP3 Tmem179-201ENSMUST00000066791 2380 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Faap20-201ENSMUST00000097747 1479 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Bad-202ENSMUST00000113423 990 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Ppic-201ENSMUST00000025419 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Actr3-201ENSMUST00000027579 2554 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Iars2-203ENSMUST00000110975 2801 ntTSL 5 BASIC19.29■□□□□ 0.68
Trim54Q9ERP3 Hoxd3-201ENSMUST00000047830 2292 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Dlk2-202ENSMUST00000166280 1341 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Mpst-203ENSMUST00000169133 1309 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Nus1-201ENSMUST00000023830 4605 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Gm45906-201ENSMUST00000208911 1430 ntBASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Hilpda-202ENSMUST00000115289 658 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Tmed5-204ENSMUST00000118036 1045 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Gm42738-201ENSMUST00000201813 439 ntTSL 3 BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Gm42922-201ENSMUST00000195887 2078 ntBASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
Trim54Q9ERP3 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Trim54Q9ERP3 Khdc3-204ENSMUST00000173734 1228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms