Protein–RNA interactions for Protein: Q9D1C8

Vps28, Vacuolar protein sorting-associated protein 28 homolog, mousemouse

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vps28Q9D1C8 Ptprf-201ENSMUST00000049074 7656 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Laptm4b-201ENSMUST00000022867 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Gm38308-201ENSMUST00000194934 1809 ntBASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Vps28Q9D1C8 Atp2c1-204ENSMUST00000112558 5642 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Scrib-201ENSMUST00000002603 5599 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Rps2-ps3-201ENSMUST00000213102 832 ntBASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Hebp1-201ENSMUST00000045855 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 U2af2-201ENSMUST00000005041 2183 ntAPPRIS ALT1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Aqp2-201ENSMUST00000023752 1416 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Gm45606-201ENSMUST00000209836 2795 ntBASIC18.29■□□□□ 0.52
Vps28Q9D1C8 U2af2-209ENSMUST00000209099 2088 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Gm38345-201ENSMUST00000192635 1748 ntBASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Atxn7-203ENSMUST00000223880 2946 ntAPPRIS P2 BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Gm19531-201ENSMUST00000216737 1377 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Gm42939-201ENSMUST00000197514 2205 ntBASIC18.29■□□□□ 0.52
Vps28Q9D1C8 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Slc29a1-201ENSMUST00000051574 1996 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Adcy2-201ENSMUST00000022013 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Nr1h2-202ENSMUST00000107910 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Gm19391-201ENSMUST00000196653 999 ntTSL 3 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Atp5d-203ENSMUST00000105367 1410 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Ptges3-202ENSMUST00000084771 1559 ntTSL 5 BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Vps28Q9D1C8 Vgf-204ENSMUST00000190827 2834 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps28Q9D1C8 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Vps28Q9D1C8 Espn-206ENSMUST00000103196 1323 ntTSL 5 BASIC18.27■□□□□ 0.52
Vps28Q9D1C8 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.27■□□□□ 0.52
Vps28Q9D1C8 Mink1-201ENSMUST00000072237 4994 ntAPPRIS ALT2 TSL 5 BASIC18.27■□□□□ 0.52
Vps28Q9D1C8 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Vps28Q9D1C8 Trappc6a-201ENSMUST00000002112 785 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Vps28Q9D1C8 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.27■□□□□ 0.52
Vps28Q9D1C8 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Vps28Q9D1C8 Gas1-201ENSMUST00000065086 2961 ntAPPRIS ALT2 BASIC18.27■□□□□ 0.51
Vps28Q9D1C8 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Vps28Q9D1C8 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Gm15378-201ENSMUST00000121894 207 ntBASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Fev-202ENSMUST00000159232 928 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Gm10138-203ENSMUST00000206952 366 ntBASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Pdgfa-201ENSMUST00000046901 1543 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Npepl1-201ENSMUST00000044415 2467 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Vps28Q9D1C8 Ciz1-201ENSMUST00000048964 2771 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Ntn1-201ENSMUST00000021284 5738 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Rtcb-201ENSMUST00000001834 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Btbd6-202ENSMUST00000165079 1975 ntAPPRIS ALT2 TSL 3 BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Ikzf5-203ENSMUST00000128432 714 ntTSL 3 BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Tspan4-201ENSMUST00000026585 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Eif4a1-213ENSMUST00000163666 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Vps28Q9D1C8 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 42.1 ms