Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Ddit4-201ENSMUST00000020308 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Moap1-202ENSMUST00000178384 1284 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Gm4968-201ENSMUST00000071458 858 ntBASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Ahr-202ENSMUST00000116436 5548 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 2810474O19Rik-201ENSMUST00000046689 6066 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Dip2c-203ENSMUST00000174552 8023 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Ddx56Q9D0R4 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Smim15-205ENSMUST00000225972 2097 ntAPPRIS P1 BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Sobp-201ENSMUST00000040275 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Gm11927-201ENSMUST00000118472 759 ntBASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Gm2559-201ENSMUST00000201323 363 ntBASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Lysmd4-209ENSMUST00000208998 2110 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Dhh-201ENSMUST00000023737 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Gm16897-201ENSMUST00000180780 2492 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Ddx56Q9D0R4 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC18.77■□□□□ 0.6
Ddx56Q9D0R4 Ssx2ip-204ENSMUST00000106153 3446 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx56Q9D0R4 Tspan2-203ENSMUST00000196611 682 ntTSL 5 BASIC18.77■□□□□ 0.6
Ddx56Q9D0R4 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx56Q9D0R4 Mef2d-202ENSMUST00000107558 1767 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Ddx56Q9D0R4 Hapln2-201ENSMUST00000005014 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Ddx56Q9D0R4 Adgrv1-207ENSMUST00000128585 2580 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Ddx56Q9D0R4 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC18.77■□□□□ 0.59
Ddx56Q9D0R4 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Six3-203ENSMUST00000176081 3680 ntAPPRIS P2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Sdc3-201ENSMUST00000070478 4973 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Atp6v0a2-201ENSMUST00000037865 5345 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
Ddx56Q9D0R4 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Smu1-201ENSMUST00000030117 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Nudt11-201ENSMUST00000103007 3036 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Zfp804a-201ENSMUST00000047527 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Klf16-201ENSMUST00000038558 2674 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Gm16475-201ENSMUST00000207306 512 ntTSL 2 BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Gm44832-201ENSMUST00000208849 2303 ntBASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Zfp691-202ENSMUST00000106355 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Atp9a-203ENSMUST00000109176 3691 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Shq1-204ENSMUST00000170667 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Ddx56Q9D0R4 Dio3-201ENSMUST00000097228 1449 ntBASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Ppp1r36-201ENSMUST00000063977 1515 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Fgf22-202ENSMUST00000219228 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Il17rb-201ENSMUST00000016110 2061 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Nectin2-202ENSMUST00000108450 1955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Pick1-201ENSMUST00000018295 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Gpr84-201ENSMUST00000079824 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Arhgap42-203ENSMUST00000183182 1458 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Espn-211ENSMUST00000105657 1375 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Polr2m-202ENSMUST00000163972 2138 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Ttyh3-202ENSMUST00000197452 4576 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Man1c1-201ENSMUST00000038628 4285 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Itga9-201ENSMUST00000044165 7020 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Ddx56Q9D0R4 Por-201ENSMUST00000005651 2636 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Rab40c-207ENSMUST00000167626 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Hjurp-202ENSMUST00000065420 2217 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ddx56Q9D0R4 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 16.2 ms