Protein–RNA interactions for Protein: Q8BWR4

Usp40, Ubiquitin carboxyl-terminal hydrolase 40, mousemouse

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp40Q8BWR4 1810012K08Rik-201ENSMUST00000155199 574 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Lsm1-203ENSMUST00000211168 343 ntTSL 3 BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 U2af2-202ENSMUST00000165399 1810 ntTSL 5 BASIC24.61■■□□□ 1.53
Usp40Q8BWR4 1700096K18Rik-201ENSMUST00000188465 1454 ntBASIC24.6■■□□□ 1.53
Usp40Q8BWR4 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Usp40Q8BWR4 Gm43353-201ENSMUST00000199224 1295 ntBASIC24.6■■□□□ 1.53
Usp40Q8BWR4 AC159205.6-201ENSMUST00000224935 887 ntBASIC24.6■■□□□ 1.53
Usp40Q8BWR4 Ewsr1-204ENSMUST00000093365 1290 ntTSL 5 BASIC24.6■■□□□ 1.53
Usp40Q8BWR4 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC24.6■■□□□ 1.53
Usp40Q8BWR4 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC24.6■■□□□ 1.53
Usp40Q8BWR4 Pdia6-201ENSMUST00000057288 2175 ntAPPRIS P1 TSL 1 (best) BASIC24.6■■□□□ 1.53
Usp40Q8BWR4 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Plxdc1-202ENSMUST00000107564 619 ntTSL 2 BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Smim1-205ENSMUST00000131325 842 ntTSL 5 BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Uchl3-201ENSMUST00000002289 903 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Eva1c-202ENSMUST00000099543 1554 ntTSL 1 (best) BASIC24.59■■□□□ 1.53
Usp40Q8BWR4 Sirt7-201ENSMUST00000080202 1727 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Gm6627-201ENSMUST00000218299 2386 ntBASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Lsm6-201ENSMUST00000051867 2107 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 1810062O18Rik-202ENSMUST00000128848 745 ntTSL 3 BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Slc25a41-202ENSMUST00000169012 1172 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Metrn-201ENSMUST00000002344 987 ntAPPRIS P1 TSL 5 BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.53
Usp40Q8BWR4 Ssu72-201ENSMUST00000030905 1472 ntAPPRIS P1 TSL 1 (best) BASIC24.58■■□□□ 1.52
Usp40Q8BWR4 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC24.57■■□□□ 1.52
Usp40Q8BWR4 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Usp40Q8BWR4 Bola2-203ENSMUST00000130498 1266 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Usp40Q8BWR4 Gm27463-201ENSMUST00000183569 57 ntBASIC24.57■■□□□ 1.52
Usp40Q8BWR4 Hist3h2ba-201ENSMUST00000078267 614 ntAPPRIS P1 BASIC24.57■■□□□ 1.52
Usp40Q8BWR4 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC24.57■■□□□ 1.52
Usp40Q8BWR4 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC24.57■■□□□ 1.52
Usp40Q8BWR4 Dbndd2-201ENSMUST00000017878 1338 ntAPPRIS P1 TSL 2 BASIC24.57■■□□□ 1.52
Usp40Q8BWR4 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Prss33-201ENSMUST00000059906 1360 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Prdm8-201ENSMUST00000112959 4553 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 4833413E03Rik-201ENSMUST00000013706 1091 ntTSL 5 BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Slc16a10-201ENSMUST00000092566 5397 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 Lancl2-201ENSMUST00000050077 2509 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Usp40Q8BWR4 9330171B17Rik-201ENSMUST00000035939 2073 ntBASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Acp5-204ENSMUST00000213815 1419 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Acp5-206ENSMUST00000217643 1447 ntAPPRIS P1 TSL 5 BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 AC124601.2-201ENSMUST00000222888 759 ntTSL 2 BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Usp40Q8BWR4 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Prickle4-201ENSMUST00000113299 990 ntTSL 5 BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Prickle4-202ENSMUST00000113300 1110 ntAPPRIS P1 TSL 5 BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Gm18959-201ENSMUST00000208954 655 ntBASIC24.54■■□□□ 1.52
Usp40Q8BWR4 4930505A04Rik-201ENSMUST00000041763 904 ntAPPRIS P1 TSL 2 BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 0610009B22Rik-201ENSMUST00000007921 813 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Shkbp1-201ENSMUST00000003857 2358 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Mycbp-202ENSMUST00000106202 1536 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Fbxl15-201ENSMUST00000026256 1348 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Fcgrt-201ENSMUST00000003512 1770 ntAPPRIS P2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 Aig1-205ENSMUST00000162610 1554 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Usp40Q8BWR4 4930426L09Rik-201ENSMUST00000028069 1459 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Usp40Q8BWR4 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Usp40Q8BWR4 Gm6659-201ENSMUST00000174752 547 ntBASIC24.53■■□□□ 1.52
Usp40Q8BWR4 Gng11-201ENSMUST00000031670 919 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Usp40Q8BWR4 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Retrieved 100 of 76,532 protein–RNA pairs in 44.8 ms