Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Actl6b-205ENSMUST00000139395 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Rnf220Q6PDX6 Gm16863-201ENSMUST00000181476 2431 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Rnf220Q6PDX6 Gm26689-201ENSMUST00000180927 1818 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Gm26553-201ENSMUST00000181531 1818 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Cacng6-202ENSMUST00000183200 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Grb7-201ENSMUST00000019456 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Katnbl1-201ENSMUST00000028552 2886 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Slain1-201ENSMUST00000069443 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Uhmk1-201ENSMUST00000027979 7864 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Arpp19-206ENSMUST00000168301 599 ntTSL 5 BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Ttc14-203ENSMUST00000117915 4913 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Shroom3-211ENSMUST00000225438 5742 ntBASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Gm32699-201ENSMUST00000221728 1988 ntBASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Pdap1-201ENSMUST00000031627 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Dbr1-201ENSMUST00000066650 2261 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Rnf220Q6PDX6 Fam98a-201ENSMUST00000112507 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Kri1-201ENSMUST00000038671 2598 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Fam72a-201ENSMUST00000068613 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Slc2a13-202ENSMUST00000109283 6536 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Gm9847-201ENSMUST00000052528 599 ntBASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Rnaset2b-201ENSMUST00000089119 1013 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Mff-202ENSMUST00000078332 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Hbs1l-203ENSMUST00000092674 2625 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Tjp1-202ENSMUST00000102592 7049 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Larp4b-201ENSMUST00000091829 5720 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Sphk1-202ENSMUST00000063446 2527 ntAPPRIS ALT2 TSL 2 BASIC16.92■□□□□ 0.3
Rnf220Q6PDX6 Atp1b1-201ENSMUST00000027863 2580 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Inpp5f-201ENSMUST00000043138 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Trim63-202ENSMUST00000105875 1886 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Pde8b-208ENSMUST00000162292 4235 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Tex261-201ENSMUST00000014892 2984 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Mrpl16-201ENSMUST00000167199 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Cdv3-202ENSMUST00000072249 3787 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Rnf220Q6PDX6 Cactin-201ENSMUST00000050867 2715 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 1700086O06Rik-202ENSMUST00000181871 1564 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Dach1-201ENSMUST00000069334 5063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 1700023F06Rik-202ENSMUST00000107026 1127 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Gemin7-203ENSMUST00000119912 653 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Usf2-203ENSMUST00000162228 960 ntTSL 5 BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Ntsr2-202ENSMUST00000220892 846 ntTSL 3 BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Spcs1-204ENSMUST00000226782 949 ntBASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Chsy3-201ENSMUST00000080721 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Gdpd5-201ENSMUST00000037528 4611 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Dhx32-203ENSMUST00000106139 2233 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Rnf220Q6PDX6 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.3
Rnf220Q6PDX6 Anapc7-201ENSMUST00000031422 2751 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
Rnf220Q6PDX6 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Gbe1-206ENSMUST00000170464 2736 ntAPPRIS ALT2 TSL 5 BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Pnpt1-201ENSMUST00000020756 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Foxp4-202ENSMUST00000113262 3198 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Sorcs3-201ENSMUST00000078880 5634 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Pde1c-203ENSMUST00000164037 3068 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Neu1-201ENSMUST00000007253 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Abhd5-204ENSMUST00000156520 3157 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Snx16-201ENSMUST00000029047 2288 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Asic2-201ENSMUST00000021045 3436 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Rnf220Q6PDX6 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC16.88■□□□□ 0.29
Rnf220Q6PDX6 Btbd10-203ENSMUST00000119278 2394 ntTSL 5 BASIC16.88■□□□□ 0.29
Rnf220Q6PDX6 5730480H06Rik-205ENSMUST00000196950 3300 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rnf220Q6PDX6 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC16.88■□□□□ 0.29
Rnf220Q6PDX6 Ctsf-201ENSMUST00000119694 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Rnf220Q6PDX6 Casc3-201ENSMUST00000017384 3963 ntAPPRIS P1 TSL 2 BASIC16.88■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 60 ms