Protein–RNA interactions for Protein: Q6P9L4

Usp49, Ubiquitin carboxyl-terminal hydrolase 49, mousemouse

Predictions only

Length 685 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp49Q6P9L4 Kmt5b-203ENSMUST00000113968 3216 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Usp49Q6P9L4 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Gm11927-201ENSMUST00000118472 759 ntBASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Gm4968-201ENSMUST00000071458 858 ntBASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Gne-202ENSMUST00000102936 2920 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Nfil3-201ENSMUST00000071065 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Bmpr1a-201ENSMUST00000049005 5956 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Fam104a-201ENSMUST00000120194 2619 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Mark3-202ENSMUST00000084953 3365 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Gm16712-201ENSMUST00000181962 1960 ntTSL 2 BASIC20.03■□□□□ 0.8
Usp49Q6P9L4 Slc16a3-201ENSMUST00000070653 2272 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp49Q6P9L4 Vhl-201ENSMUST00000035673 2792 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp49Q6P9L4 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC20.02■□□□□ 0.8
Usp49Q6P9L4 Tex264-203ENSMUST00000169068 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Usp49Q6P9L4 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Usp49Q6P9L4 Fam131a-202ENSMUST00000118919 2262 ntTSL 5 BASIC20.02■□□□□ 0.8
Usp49Q6P9L4 B3gnt9-202ENSMUST00000136822 2516 ntAPPRIS P1 BASIC20.02■□□□□ 0.79
Usp49Q6P9L4 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp49Q6P9L4 Gm37820-201ENSMUST00000194021 2147 ntBASIC20.02■□□□□ 0.79
Usp49Q6P9L4 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC20.02■□□□□ 0.79
Usp49Q6P9L4 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp49Q6P9L4 Trabd-206ENSMUST00000169891 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
Usp49Q6P9L4 Epn1-202ENSMUST00000098845 2565 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Pacsin1-204ENSMUST00000114873 1857 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Ubald1-201ENSMUST00000037843 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Hspbp1-201ENSMUST00000079970 1593 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Ppm1b-202ENSMUST00000112304 3262 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Nup85-201ENSMUST00000021085 2230 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Nnat-210ENSMUST00000173839 1135 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Gm3807-201ENSMUST00000193520 1168 ntBASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Hmg20b-201ENSMUST00000020454 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Gm16386-201ENSMUST00000181397 1423 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Taf9-205ENSMUST00000190594 1962 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Usp49Q6P9L4 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Mrpl15-205ENSMUST00000146665 1569 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC20■□□□□ 0.79
Usp49Q6P9L4 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Deaf1-209ENSMUST00000211537 2882 ntTSL 2 BASIC20■□□□□ 0.79
Usp49Q6P9L4 Amigo2-201ENSMUST00000053106 2871 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC20■□□□□ 0.79
Usp49Q6P9L4 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC20■□□□□ 0.79
Usp49Q6P9L4 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Fam172a-202ENSMUST00000099358 2242 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Hspa1l-201ENSMUST00000007248 2472 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
Usp49Q6P9L4 Nudt17-204ENSMUST00000200387 2108 ntTSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Sh2b2-203ENSMUST00000196397 2797 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
Usp49Q6P9L4 Flg-201ENSMUST00000050758 1488 ntBASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Gm15408-201ENSMUST00000124198 1379 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Tomm6-202ENSMUST00000113302 749 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Gm15847-201ENSMUST00000121417 1065 ntBASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Aire-204ENSMUST00000128241 1938 ntAPPRIS P3 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Aire-205ENSMUST00000130972 1923 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Aire-212ENSMUST00000145975 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Aire-201ENSMUST00000019257 1926 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 Meg3-201ENSMUST00000124106 1988 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
Usp49Q6P9L4 2810459M11Rik-202ENSMUST00000165824 3331 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Matk-201ENSMUST00000105328 2228 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Mycn-202ENSMUST00000130990 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Rbpms-213ENSMUST00000191473 2547 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Acbd4-203ENSMUST00000107040 1959 ntTSL 2 BASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Zdhhc12-202ENSMUST00000102865 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Dio3-201ENSMUST00000097228 1449 ntBASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Meox1-201ENSMUST00000057054 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
Usp49Q6P9L4 Cdc123-201ENSMUST00000043864 1827 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Gnao1-201ENSMUST00000034198 2948 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Taf6l-211ENSMUST00000177056 2006 ntTSL 5 BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Gmcl1-201ENSMUST00000001185 2949 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Ngb-201ENSMUST00000021420 1616 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Dut-201ENSMUST00000051605 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Foxo3-204ENSMUST00000175881 2535 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Usp49Q6P9L4 Espn-209ENSMUST00000105655 1350 ntTSL 5 BASIC19.96■□□□□ 0.79
Usp49Q6P9L4 Nectin1-201ENSMUST00000034510 5653 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Usp49Q6P9L4 Lat2-202ENSMUST00000077636 1717 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms