Protein–RNA interactions for Protein: Q69ZI1

Sh3rf1, E3 ubiquitin-protein ligase SH3RF1, mousemouse

Predictions only

Length 892 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sh3rf1Q69ZI1 Gm15558-201ENSMUST00000126849 2018 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Rap2a-201ENSMUST00000062117 4191 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Cpox-201ENSMUST00000060077 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Tspan2os-201ENSMUST00000146624 590 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Mcl1-202ENSMUST00000178686 858 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Zfp119b-201ENSMUST00000056147 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 8030462N17Rik-201ENSMUST00000074653 3418 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Sh3rf1Q69ZI1 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Soga1-201ENSMUST00000069098 7864 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Odf2-211ENSMUST00000113767 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Coq5-201ENSMUST00000040421 2037 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Ulk2-201ENSMUST00000004920 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Gpaa1-210ENSMUST00000172281 1809 ntTSL 5 BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Yeats4-201ENSMUST00000020382 1327 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Gm12527-201ENSMUST00000117967 564 ntBASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Dsg2-203ENSMUST00000121837 953 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Uqcc2-201ENSMUST00000025045 500 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Retreg1-201ENSMUST00000022881 3248 ntTSL 5 BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Pex6-201ENSMUST00000002840 3200 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Sh3rf1Q69ZI1 Ccser1-203ENSMUST00000126214 5657 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Bmt2-201ENSMUST00000045235 4143 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Lzts2-201ENSMUST00000039016 2825 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Arl6ip4-202ENSMUST00000122394 982 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Gm6211-202ENSMUST00000167849 925 ntBASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Lhx6-203ENSMUST00000112963 3481 ntTSL 2 BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Slc30a9-204ENSMUST00000162372 5711 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 A930017K11Rik-201ENSMUST00000162431 2539 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Sh3rf1Q69ZI1 Whrn-206ENSMUST00000102867 4013 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Sh3rf1Q69ZI1 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Sh3rf1Q69ZI1 Foxj3-209ENSMUST00000162267 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Sh3rf1Q69ZI1 Dlgap1-206ENSMUST00000133717 2355 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Crebzf-201ENSMUST00000061767 3376 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 2610035F20Rik-202ENSMUST00000177306 1149 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Gm20760-201ENSMUST00000179197 648 ntBASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Tmem54-201ENSMUST00000030575 1064 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Ddx28-201ENSMUST00000058579 2262 ntAPPRIS P1 BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Hmgxb3-201ENSMUST00000091884 5101 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Axin1-203ENSMUST00000163421 2890 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC18.08■□□□□ 0.48
Sh3rf1Q69ZI1 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Dnaja3-202ENSMUST00000115854 2505 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Dkk4-201ENSMUST00000033936 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Lrp3-201ENSMUST00000118444 3877 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 2610528J11Rik-202ENSMUST00000106367 736 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Gm10153-202ENSMUST00000210290 963 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Crb3-202ENSMUST00000097299 1206 ntAPPRIS P3 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Auh-202ENSMUST00000110031 3235 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Aifm2-204ENSMUST00000105455 1512 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Wnt6-201ENSMUST00000006716 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Sh3rf1Q69ZI1 Mrps23-203ENSMUST00000118784 1404 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Mapre3-201ENSMUST00000031058 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Rimklb-201ENSMUST00000068242 4725 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 9930012K11Rik-201ENSMUST00000058240 1986 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Zfp865-203ENSMUST00000085427 2751 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Ocel1-202ENSMUST00000110051 2179 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Gm22240-201ENSMUST00000175225 82 ntBASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Ttc32-201ENSMUST00000085741 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Kmt5b-202ENSMUST00000052699 3290 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Slain2-202ENSMUST00000144843 4833 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Sh3rf1Q69ZI1 Wnt16-201ENSMUST00000031681 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 23.9 ms