Protein–RNA interactions for Protein: Q61124

Cln3, Battenin, mousemouse

Predictions only

Length 438 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cln3Q61124 AC134329.2-201ENSMUST00000217897 428 ntBASIC19.67■□□□□ 0.74
Cln3Q61124 Lce1h-201ENSMUST00000051521 706 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cln3Q61124 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Cln3Q61124 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Cln3Q61124 Krt80-201ENSMUST00000077196 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Cln3Q61124 Nsmf-206ENSMUST00000114388 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cln3Q61124 Dynll2-202ENSMUST00000107923 2443 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
Cln3Q61124 4430402I18Rik-205ENSMUST00000162110 1559 ntAPPRIS P1 TSL 5 BASIC19.66■□□□□ 0.74
Cln3Q61124 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cln3Q61124 Disc1-208ENSMUST00000122389 1694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cln3Q61124 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cln3Q61124 Gm7638-201ENSMUST00000121348 967 ntBASIC19.66■□□□□ 0.74
Cln3Q61124 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC19.66■□□□□ 0.74
Cln3Q61124 Gtf3a-204ENSMUST00000146511 1298 ntAPPRIS P5 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cln3Q61124 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC19.66■□□□□ 0.74
Cln3Q61124 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cln3Q61124 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.66■□□□□ 0.74
Cln3Q61124 Cdk8-201ENSMUST00000031640 2973 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Cln3Q61124 Ggt6-202ENSMUST00000100903 1387 ntTSL 5 BASIC19.66■□□□□ 0.74
Cln3Q61124 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cln3Q61124 Hmces-202ENSMUST00000113606 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Cln3Q61124 Gm9725-202ENSMUST00000166229 2326 ntTSL 5 BASIC19.65■□□□□ 0.74
Cln3Q61124 Map3k7cl-201ENSMUST00000026700 1652 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cln3Q61124 Cutc-202ENSMUST00000112047 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cln3Q61124 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cln3Q61124 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC19.65■□□□□ 0.74
Cln3Q61124 Gm24841-201ENSMUST00000158676 357 ntBASIC19.65■□□□□ 0.74
Cln3Q61124 Flg-203ENSMUST00000178695 777 ntAPPRIS P5 BASIC19.65■□□□□ 0.74
Cln3Q61124 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC19.65■□□□□ 0.74
Cln3Q61124 Gm18101-201ENSMUST00000215769 548 ntBASIC19.65■□□□□ 0.74
Cln3Q61124 Gm7791-201ENSMUST00000219066 539 ntBASIC19.65■□□□□ 0.74
Cln3Q61124 Tbpl1-201ENSMUST00000095794 1195 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cln3Q61124 Cpsf4-207ENSMUST00000162244 1387 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cln3Q61124 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.65■□□□□ 0.74
Cln3Q61124 Clk3-201ENSMUST00000065330 2496 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cln3Q61124 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Cln3Q61124 Dcbld1-203ENSMUST00000218582 2795 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Cln3Q61124 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cln3Q61124 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cln3Q61124 Plk3-201ENSMUST00000076859 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
Cln3Q61124 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
Cln3Q61124 Notumos-201ENSMUST00000151998 2659 ntBASIC19.64■□□□□ 0.73
Cln3Q61124 Steap1-201ENSMUST00000015796 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Spata33-206ENSMUST00000212637 569 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
Cln3Q61124 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Vps37d-202ENSMUST00000076203 1286 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Dscc1-201ENSMUST00000023059 1324 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Csf3-201ENSMUST00000038886 1413 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.64■□□□□ 0.73
Cln3Q61124 Tgds-204ENSMUST00000228543 1594 ntBASIC19.64■□□□□ 0.73
Cln3Q61124 Pigu-201ENSMUST00000077626 1636 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
Cln3Q61124 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC19.64■□□□□ 0.73
Cln3Q61124 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
Cln3Q61124 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Fam193a-202ENSMUST00000180376 5536 ntAPPRIS P5 TSL 5 BASIC19.63■□□□□ 0.73
Cln3Q61124 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Schip1-203ENSMUST00000170788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Bdkrb1-202ENSMUST00000182899 1313 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Cln3Q61124 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC19.63■□□□□ 0.73
Cln3Q61124 Bdkrb1-201ENSMUST00000041229 1338 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cln3Q61124 Hist1h2bj-201ENSMUST00000110452 463 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cln3Q61124 Hist1h2bp-202ENSMUST00000110473 621 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Tppp3-202ENSMUST00000176419 719 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Ak6-201ENSMUST00000022135 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Hist1h2bm-201ENSMUST00000224651 524 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cln3Q61124 Il17a-201ENSMUST00000027061 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Grcc10-201ENSMUST00000004389 863 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Kalrn-208ENSMUST00000114961 6128 ntTSL 5 BASIC19.63■□□□□ 0.73
Cln3Q61124 Mpig6b-201ENSMUST00000097337 2252 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
Cln3Q61124 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Cln3Q61124 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Kcnk3-201ENSMUST00000066295 3811 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Larp1b-206ENSMUST00000191872 1505 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Phldb3-201ENSMUST00000073325 2273 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Cln3Q61124 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 D330023K18Rik-201ENSMUST00000133550 920 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Snx15-207ENSMUST00000154601 767 ntTSL 5 BASIC19.62■□□□□ 0.73
Cln3Q61124 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Lce1i-201ENSMUST00000090866 731 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
Cln3Q61124 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 Stk35-201ENSMUST00000165413 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Cln3Q61124 2410002F23Rik-217ENSMUST00000188111 2131 ntAPPRIS P2 TSL 2 BASIC19.61■□□□□ 0.73
Cln3Q61124 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Zfp689-202ENSMUST00000106299 1417 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
Cln3Q61124 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Cln3Q61124 Cklf-208ENSMUST00000212433 1304 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms