Protein–RNA interactions for Protein: Q60649

Clpb, Caseinolytic peptidase B protein homolog, mousemouse

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ClpbQ60649 1600012H06Rik-203ENSMUST00000174004 1466 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ClpbQ60649 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ClpbQ60649 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ClpbQ60649 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
ClpbQ60649 Map4k4-202ENSMUST00000168431 5632 ntAPPRIS ALT2 TSL 5 BASIC17.15■□□□□ 0.34
ClpbQ60649 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
ClpbQ60649 Gm45844-202ENSMUST00000209325 2450 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
ClpbQ60649 Icam5-201ENSMUST00000019616 2947 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 Pgrmc1-201ENSMUST00000073339 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 2810004N23Rik-201ENSMUST00000034465 2340 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 Ankrd39-201ENSMUST00000001172 2109 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC17.14■□□□□ 0.33
ClpbQ60649 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 Znrf4-201ENSMUST00000052211 1236 ntAPPRIS P1 BASIC17.14■□□□□ 0.33
ClpbQ60649 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 Lbp-202ENSMUST00000109491 1322 ntTSL 2 BASIC17.14■□□□□ 0.33
ClpbQ60649 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC17.14■□□□□ 0.33
ClpbQ60649 Mrpl15-203ENSMUST00000130201 1894 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
ClpbQ60649 Bin2-204ENSMUST00000182775 1908 ntTSL 5 BASIC17.13■□□□□ 0.33
ClpbQ60649 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 Ldlrad4-201ENSMUST00000063775 2493 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 Cbx1-201ENSMUST00000018810 1824 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
ClpbQ60649 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC17.13■□□□□ 0.33
ClpbQ60649 Trmt13-210ENSMUST00000198454 880 ntBASIC17.13■□□□□ 0.33
ClpbQ60649 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 AC163637.2-201ENSMUST00000213826 1945 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
ClpbQ60649 Camta1-204ENSMUST00000105670 4961 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.13■□□□□ 0.33
ClpbQ60649 B3gat2-202ENSMUST00000140583 1737 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 Lats2-201ENSMUST00000022531 5191 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
ClpbQ60649 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
ClpbQ60649 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC17.12■□□□□ 0.33
ClpbQ60649 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
ClpbQ60649 Mbip-201ENSMUST00000021416 1512 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Snx21-201ENSMUST00000056181 2590 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Usp36-202ENSMUST00000106296 5655 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
ClpbQ60649 Wasf3-201ENSMUST00000016143 5196 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Gm12896-201ENSMUST00000118430 226 ntBASIC17.12■□□□□ 0.33
ClpbQ60649 Gm8520-201ENSMUST00000186517 868 ntBASIC17.12■□□□□ 0.33
ClpbQ60649 Gm37856-201ENSMUST00000191634 999 ntBASIC17.12■□□□□ 0.33
ClpbQ60649 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Cyp26c1-201ENSMUST00000073391 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Cspg5-205ENSMUST00000199736 2107 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Fam46a-202ENSMUST00000187711 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
ClpbQ60649 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ClpbQ60649 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ClpbQ60649 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ClpbQ60649 AA465934-203ENSMUST00000177150 383 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ClpbQ60649 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC17.11■□□□□ 0.33
ClpbQ60649 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
ClpbQ60649 Rilp-201ENSMUST00000042972 1489 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
ClpbQ60649 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC17.11■□□□□ 0.33
ClpbQ60649 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ClpbQ60649 Podxl2-202ENSMUST00000061262 2195 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.33
ClpbQ60649 Tbc1d2b-202ENSMUST00000128874 3473 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
ClpbQ60649 Pfn2-201ENSMUST00000066882 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.1■□□□□ 0.33
ClpbQ60649 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Rd3-201ENSMUST00000175680 1969 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Mthfd2-201ENSMUST00000005810 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
ClpbQ60649 Tnnt2-201ENSMUST00000027671 1064 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
ClpbQ60649 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Stac2-201ENSMUST00000017544 3050 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Ythdf3-201ENSMUST00000108345 5102 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Pitx1-201ENSMUST00000021968 2451 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 Nxn-201ENSMUST00000021204 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
ClpbQ60649 AC122335.2-201ENSMUST00000213901 6181 ntBASIC17.1■□□□□ 0.33
ClpbQ60649 Enah-205ENSMUST00000177811 4231 ntAPPRIS ALT2 TSL 5 BASIC17.1■□□□□ 0.33
ClpbQ60649 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
ClpbQ60649 Prdm6-203ENSMUST00000115399 2227 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
ClpbQ60649 Trim44-201ENSMUST00000102573 5612 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ClpbQ60649 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC17.09■□□□□ 0.33
ClpbQ60649 Mxi1-201ENSMUST00000003870 5156 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ClpbQ60649 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
ClpbQ60649 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ClpbQ60649 Gm44878-201ENSMUST00000205812 1295 ntBASIC17.09■□□□□ 0.33
ClpbQ60649 Rpl18-202ENSMUST00000209287 1027 ntTSL 3 BASIC17.09■□□□□ 0.33
ClpbQ60649 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC17.09■□□□□ 0.33
ClpbQ60649 Tsnax-202ENSMUST00000212603 2169 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ClpbQ60649 Nfatc2-205ENSMUST00000137451 2369 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
ClpbQ60649 Agfg2-201ENSMUST00000031736 2893 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
ClpbQ60649 Mtch2-205ENSMUST00000136872 2596 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ClpbQ60649 C1ql3-201ENSMUST00000061545 2535 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
ClpbQ60649 Keap1-204ENSMUST00000193982 2163 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.33
ClpbQ60649 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 76,532 protein–RNA pairs in 22.3 ms