Protein–RNA interactions for Protein: Q5R1E6

Trav6-3, T cell receptor alpha variable 6-3 (Fragment), mousemouse

Predictions only

Length 112 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6-3Q5R1E6 Mipol1-201ENSMUST00000123498 2117 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Asb1-202ENSMUST00000086843 2490 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Il17rc-201ENSMUST00000058300 2302 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Ocel1-203ENSMUST00000110052 5285 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Camsap2-201ENSMUST00000048309 7823 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Diras1-201ENSMUST00000055125 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Rab1a-201ENSMUST00000020358 2827 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Zxdc-203ENSMUST00000113539 4864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Rab5c-202ENSMUST00000107364 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Sft2d2-201ENSMUST00000043338 5535 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Kcnj4-201ENSMUST00000057801 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Idnk-202ENSMUST00000109868 1462 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Lgmn-201ENSMUST00000021607 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Trav6-3Q5R1E6 Arl1-202ENSMUST00000116234 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Gpn3-201ENSMUST00000031420 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Rnf112-202ENSMUST00000060255 3161 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Kat2b-ps-201ENSMUST00000128468 2490 ntBASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Erh-205ENSMUST00000218740 981 ntTSL 2 BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Gm44544-201ENSMUST00000207052 1844 ntBASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Neurl1b-201ENSMUST00000053020 6195 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Idnk-204ENSMUST00000226010 1898 ntBASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Chst8-203ENSMUST00000154629 2079 ntTSL 5 BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 4930503L19Rik-201ENSMUST00000067556 2291 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Cntln-201ENSMUST00000047023 5528 ntAPPRIS ALT2 TSL 5 BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Ppp2r1b-205ENSMUST00000175640 1523 ntTSL 5 BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Eif6-201ENSMUST00000029142 1500 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Trav6-3Q5R1E6 Garem1-201ENSMUST00000049260 4923 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Msl1-204ENSMUST00000107487 2836 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Nespas-203ENSMUST00000151472 2248 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Haus8-201ENSMUST00000035960 2013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Isyna1-201ENSMUST00000019283 1836 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Nptxr-203ENSMUST00000175858 4948 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Rrbp1-202ENSMUST00000037875 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Cfl1-201ENSMUST00000116560 1148 ntTSL 5 BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Nudt14-201ENSMUST00000002881 734 ntTSL 2 BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Med9-201ENSMUST00000081980 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Arhgef19-201ENSMUST00000006618 3414 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Cog2-201ENSMUST00000034460 2825 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Gm37563-201ENSMUST00000192580 1513 ntBASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Tuba3a-201ENSMUST00000088246 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Setdb2-202ENSMUST00000111253 1774 ntTSL 2 BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Hikeshi-206ENSMUST00000153470 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Lancl2-202ENSMUST00000072954 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Shroom3-211ENSMUST00000225438 5742 ntBASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Tub-201ENSMUST00000033341 5997 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Trav6-3Q5R1E6 Fkbp5-201ENSMUST00000079413 3542 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trav6-3Q5R1E6 Gm26674-201ENSMUST00000180770 1446 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Trav6-3Q5R1E6 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trav6-3Q5R1E6 Dcaf8-206ENSMUST00000192704 2859 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Trav6-3Q5R1E6 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Gm42642-201ENSMUST00000200683 355 ntBASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Specc1-215ENSMUST00000202744 674 ntTSL 3 BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Gm5898-201ENSMUST00000121016 2071 ntBASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Hspa5-202ENSMUST00000100171 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Pkp4-202ENSMUST00000102754 4614 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Large1-202ENSMUST00000119826 4647 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Ebf3-204ENSMUST00000169486 4994 ntAPPRIS ALT1 TSL 5 BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Agfg1-206ENSMUST00000189220 8044 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Cfap206-202ENSMUST00000108136 1688 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Nrl-201ENSMUST00000062232 2504 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Trav6-3Q5R1E6 Arpc4-201ENSMUST00000156898 2270 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Coil-201ENSMUST00000036649 2607 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Adra2a-201ENSMUST00000036700 3801 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Vstm2b-203ENSMUST00000205845 1455 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Timm17b-201ENSMUST00000033498 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Ctnnbip1-201ENSMUST00000030839 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Lins1-203ENSMUST00000121777 2729 ntAPPRIS P3 TSL 2 BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Dlgap1-209ENSMUST00000140728 2173 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Aldh7a1-206ENSMUST00000172734 1880 ntTSL 5 BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Matn4-202ENSMUST00000103104 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Trav6-3Q5R1E6 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC14.32□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 48.5 ms