Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 Atg101-201ENSMUST00000048393 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 2310039H08Rik-201ENSMUST00000071430 773 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Col6a1Q04857 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Col6a1Q04857 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col6a1Q04857 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
Col6a1Q04857 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC19.7■□□□□ 0.74
Col6a1Q04857 Gm38285-201ENSMUST00000192928 922 ntBASIC19.7■□□□□ 0.74
Col6a1Q04857 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC19.7■□□□□ 0.74
Col6a1Q04857 Rhod-202ENSMUST00000117462 1495 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col6a1Q04857 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
Col6a1Q04857 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC19.7■□□□□ 0.74
Col6a1Q04857 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
Col6a1Q04857 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Anapc16-204ENSMUST00000182898 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Gm10489-201ENSMUST00000180511 1466 ntTSL 2 BASIC19.69■□□□□ 0.74
Col6a1Q04857 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Pgam1-ps2-201ENSMUST00000117129 765 ntBASIC19.69■□□□□ 0.74
Col6a1Q04857 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Gzmm-201ENSMUST00000020549 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 AC154471.1-201ENSMUST00000224418 436 ntBASIC19.69■□□□□ 0.74
Col6a1Q04857 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC19.69■□□□□ 0.74
Col6a1Q04857 Fam98b-201ENSMUST00000028825 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
Col6a1Q04857 Fmnl2-201ENSMUST00000049483 5461 ntTSL 5 BASIC19.69■□□□□ 0.74
Col6a1Q04857 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Tlcd1-204ENSMUST00000127587 1412 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
Col6a1Q04857 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Hist1h2bf-201ENSMUST00000105106 461 ntAPPRIS P1 BASIC19.68■□□□□ 0.74
Col6a1Q04857 Rps14-202ENSMUST00000118551 602 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Col6a1Q04857 Zfp629-206ENSMUST00000132524 215 ntTSL 5 BASIC19.68■□□□□ 0.74
Col6a1Q04857 Gm15545-202ENSMUST00000141011 899 ntTSL 3 BASIC19.68■□□□□ 0.74
Col6a1Q04857 Mir6349-201ENSMUST00000184059 97 ntBASIC19.68■□□□□ 0.74
Col6a1Q04857 Psma6-201ENSMUST00000021412 1042 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Nipa2-202ENSMUST00000117812 3039 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
Col6a1Q04857 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
Col6a1Q04857 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Gm18688-201ENSMUST00000204695 1859 ntBASIC19.67■□□□□ 0.74
Col6a1Q04857 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 Gm17092-201ENSMUST00000166606 698 ntTSL 2 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Nr2c2ap-202ENSMUST00000211898 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 D230030E09Rik-201ENSMUST00000222459 884 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 Ephx4-201ENSMUST00000049146 1279 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 Syt3-203ENSMUST00000120262 2096 ntAPPRIS P1 TSL 5 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Mprip-201ENSMUST00000066330 7765 ntAPPRIS ALT2 TSL 5 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
Col6a1Q04857 Eif2b4-212ENSMUST00000202758 1767 ntTSL 5 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Purb-201ENSMUST00000179343 8319 ntAPPRIS P1 BASIC19.67■□□□□ 0.74
Col6a1Q04857 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Blcap-202ENSMUST00000109528 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Psmg4-201ENSMUST00000124996 474 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Arpc4-204ENSMUST00000204802 794 ntTSL 3 BASIC19.66■□□□□ 0.74
Col6a1Q04857 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.66■□□□□ 0.74
Col6a1Q04857 AC130713.1-201ENSMUST00000228853 1096 ntBASIC19.66■□□□□ 0.74
Col6a1Q04857 Ckm-201ENSMUST00000003643 1235 ntTSL 5 BASIC19.66■□□□□ 0.74
Col6a1Q04857 Guca1a-201ENSMUST00000059348 871 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Lzic-201ENSMUST00000030842 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
Col6a1Q04857 Gm8309-201ENSMUST00000206627 1448 ntBASIC19.66■□□□□ 0.74
Col6a1Q04857 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
Col6a1Q04857 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Arhgap23-203ENSMUST00000121799 5816 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
Col6a1Q04857 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC19.65■□□□□ 0.74
Col6a1Q04857 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Wnk2-202ENSMUST00000049265 6738 ntAPPRIS ALT2 TSL 5 BASIC19.65■□□□□ 0.74
Col6a1Q04857 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Gm26938-201ENSMUST00000182839 744 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
Col6a1Q04857 Gm27463-201ENSMUST00000183569 57 ntBASIC19.65■□□□□ 0.74
Col6a1Q04857 Rps2-ps2-201ENSMUST00000194305 881 ntBASIC19.65■□□□□ 0.74
Col6a1Q04857 Rpp25l-201ENSMUST00000038434 856 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Col6a1Q04857 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms