Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Cenpa-205ENSMUST00000144742 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox1P53783 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox1P53783 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox1P53783 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC18.28■□□□□ 0.52
Sox1P53783 Gm15545-203ENSMUST00000150613 1059 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Sox1P53783 Sae1-203ENSMUST00000210999 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox1P53783 Nme4-201ENSMUST00000025007 912 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox1P53783 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox1P53783 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Sox1P53783 Wnk2-201ENSMUST00000035538 6630 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Sox1P53783 Ubl3-201ENSMUST00000079324 2537 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox1P53783 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.27■□□□□ 0.52
Sox1P53783 Tcp1-201ENSMUST00000089024 1902 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Sox1P53783 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox1P53783 Nudt16-201ENSMUST00000035179 1631 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox1P53783 Edf1-201ENSMUST00000015236 722 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox1P53783 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC18.27■□□□□ 0.52
Sox1P53783 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox1P53783 Odf3b-201ENSMUST00000049968 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox1P53783 Gm5540-201ENSMUST00000131852 1848 ntBASIC18.27■□□□□ 0.52
Sox1P53783 Scamp4-201ENSMUST00000079883 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
Sox1P53783 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Sox1P53783 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Sox1P53783 Rrs1-201ENSMUST00000072079 2048 ntAPPRIS P1 BASIC18.27■□□□□ 0.51
Sox1P53783 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC18.26■□□□□ 0.51
Sox1P53783 Mtg2-202ENSMUST00000108901 1444 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Sox1P53783 Coro1a-201ENSMUST00000032949 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Ppdpf-201ENSMUST00000016488 1160 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Sox1P53783 Cldn19-201ENSMUST00000084309 924 ntAPPRIS P4 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Acot7-203ENSMUST00000105652 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Bend3-202ENSMUST00000167488 6337 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
Sox1P53783 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Sox1P53783 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC18.25■□□□□ 0.51
Sox1P53783 Mettl4-ps1-202ENSMUST00000130218 1323 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.25■□□□□ 0.51
Sox1P53783 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC18.25■□□□□ 0.51
Sox1P53783 Nr1h2-201ENSMUST00000073488 1999 ntAPPRIS P3 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Il15ra-201ENSMUST00000078834 1600 ntAPPRIS P3 TSL 5 BASIC18.25■□□□□ 0.51
Sox1P53783 Gm7638-201ENSMUST00000121348 967 ntBASIC18.25■□□□□ 0.51
Sox1P53783 Lgals3-203ENSMUST00000146468 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Gm27217-201ENSMUST00000183438 882 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Rae1-201ENSMUST00000029013 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 4932702P03Rik-201ENSMUST00000138447 1482 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Sox1P53783 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Zyg11a-202ENSMUST00000106690 2421 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Sox1P53783 Snx5-201ENSMUST00000028909 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Tsen54-201ENSMUST00000021134 1979 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Depdc7-201ENSMUST00000028595 1801 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Gm10418-201ENSMUST00000100943 576 ntBASIC18.24■□□□□ 0.51
Sox1P53783 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC18.24■□□□□ 0.51
Sox1P53783 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC18.24■□□□□ 0.51
Sox1P53783 Mfap2-203ENSMUST00000166376 890 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
Sox1P53783 Ets1-206ENSMUST00000184887 2107 ntTSL 5 BASIC18.24■□□□□ 0.51
Sox1P53783 Zfp747-202ENSMUST00000205832 618 ntTSL 3 BASIC18.24■□□□□ 0.51
Sox1P53783 Gm18195-201ENSMUST00000207604 706 ntBASIC18.24■□□□□ 0.51
Sox1P53783 Imp3-201ENSMUST00000034827 924 ntAPPRIS P1 BASIC18.24■□□□□ 0.51
Sox1P53783 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Gal3st1-201ENSMUST00000063004 1879 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Snhg20-203ENSMUST00000182811 2153 ntBASIC18.24■□□□□ 0.51
Sox1P53783 Gm10125-201ENSMUST00000074702 2286 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Sox1P53783 Bnipl-201ENSMUST00000098871 1414 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Sox1P53783 Raph1-202ENSMUST00000090293 2409 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Sox1P53783 Alg1-202ENSMUST00000100196 1755 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox1P53783 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox1P53783 Mir770-201ENSMUST00000103252 94 ntBASIC18.23■□□□□ 0.51
Sox1P53783 Gm11860-201ENSMUST00000122346 1010 ntBASIC18.23■□□□□ 0.51
Sox1P53783 Gm15677-201ENSMUST00000152302 766 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Sox1P53783 Pih1d2-201ENSMUST00000000171 1256 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox1P53783 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC18.23■□□□□ 0.51
Sox1P53783 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Sox1P53783 Homer1-206ENSMUST00000109493 2580 ntTSL 5 BASIC18.23■□□□□ 0.51
Sox1P53783 Aig1-201ENSMUST00000019942 1439 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Sox1P53783 Lsr-203ENSMUST00000108116 2071 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox1P53783 Esco1-202ENSMUST00000097670 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox1P53783 Snx20-201ENSMUST00000034087 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox1P53783 Gata5os-201ENSMUST00000069943 1678 ntTSL 2 BASIC18.22■□□□□ 0.51
Sox1P53783 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox1P53783 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Sox1P53783 B4gat1-201ENSMUST00000053705 2035 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox1P53783 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Sox1P53783 Dynll2-201ENSMUST00000020775 2476 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Sox1P53783 Gm44544-201ENSMUST00000207052 1844 ntBASIC18.22■□□□□ 0.51
Sox1P53783 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Retrieved 100 of 76,532 protein–RNA pairs in 74.1 ms