Protein–RNA interactions for Protein: P42859

Htt, Huntingtin, mousemouse

Predictions only

Length 3,119 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HttP42859 Gm15853-202ENSMUST00000195518 2041 ntBASIC19.24■□□□□ 0.67
HttP42859 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Gm26871-202ENSMUST00000180774 695 ntTSL 2 BASIC19.23■□□□□ 0.67
HttP42859 Faap24-201ENSMUST00000032704 1857 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Siah2-201ENSMUST00000070368 2511 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Cldn7-201ENSMUST00000018713 1335 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Tmem254c-202ENSMUST00000100819 1211 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Gm11594-201ENSMUST00000122313 162 ntBASIC19.23■□□□□ 0.67
HttP42859 Scpep1os-201ENSMUST00000139592 811 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Gm28914-201ENSMUST00000188115 667 ntTSL 2 BASIC19.23■□□□□ 0.67
HttP42859 Gm45669-201ENSMUST00000209808 459 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Ppib-201ENSMUST00000034947 892 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Ifi27l2a-201ENSMUST00000055071 463 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Tor3a-207ENSMUST00000188964 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Tmem254b-201ENSMUST00000022418 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Tmem175-204ENSMUST00000146207 1686 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Pcbp1-201ENSMUST00000053015 1830 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
HttP42859 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 Gm11355-201ENSMUST00000121120 306 ntBASIC19.23■□□□□ 0.67
HttP42859 Mcub-204ENSMUST00000153506 1005 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HttP42859 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC19.23■□□□□ 0.67
HttP42859 Itm2c-203ENSMUST00000185569 1465 ntTSL 5 BASIC19.22■□□□□ 0.67
HttP42859 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Notum-202ENSMUST00000106177 2212 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
HttP42859 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Paip1-201ENSMUST00000026520 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Gabbr1-202ENSMUST00000172789 1460 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Snhg4-201ENSMUST00000181664 1190 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Lbx2-201ENSMUST00000041265 817 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Nudt1-201ENSMUST00000050205 954 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Nudt1-202ENSMUST00000071881 952 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HttP42859 Srsf12-201ENSMUST00000067864 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HttP42859 Eif1a-202ENSMUST00000168382 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HttP42859 Oraov1-203ENSMUST00000105895 1016 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
HttP42859 Msh3-205ENSMUST00000187424 666 ntTSL 2 BASIC19.21■□□□□ 0.67
HttP42859 Dvl1-201ENSMUST00000030948 3358 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HttP42859 1700020A23Rik-202ENSMUST00000110281 521 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
HttP42859 A230065H16Rik-201ENSMUST00000150384 670 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HttP42859 Gm40457-201ENSMUST00000205319 1174 ntTSL 5 BASIC19.21■□□□□ 0.67
HttP42859 Nek4-204ENSMUST00000226833 1252 ntAPPRIS ALT2 BASIC19.21■□□□□ 0.67
HttP42859 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.66
HttP42859 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC19.2■□□□□ 0.66
HttP42859 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HttP42859 Brsk1-201ENSMUST00000048248 2996 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HttP42859 Nmnat3-203ENSMUST00000112938 848 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HttP42859 Ndufab1-ps-201ENSMUST00000166096 468 ntBASIC19.2■□□□□ 0.66
HttP42859 Tamm41-201ENSMUST00000032461 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HttP42859 Gm8994-201ENSMUST00000077886 1236 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
HttP42859 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HttP42859 Ino80e-202ENSMUST00000106342 1840 ntTSL 3 BASIC19.2■□□□□ 0.66
HttP42859 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HttP42859 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC19.19■□□□□ 0.66
HttP42859 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
HttP42859 Gm45328-201ENSMUST00000210942 917 ntBASIC19.19■□□□□ 0.66
HttP42859 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HttP42859 Has3-202ENSMUST00000175987 1154 ntTSL 5 BASIC19.19■□□□□ 0.66
HttP42859 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HttP42859 Glrx5-201ENSMUST00000021522 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HttP42859 Fstl3-201ENSMUST00000020575 1955 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HttP42859 Lce1k-201ENSMUST00000179917 663 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
HttP42859 Vti1a-206ENSMUST00000225529 1244 ntBASIC19.18■□□□□ 0.66
HttP42859 Sf3b6-201ENSMUST00000046207 1180 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HttP42859 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
HttP42859 Gm11611-201ENSMUST00000134289 1326 ntTSL 3 BASIC19.18■□□□□ 0.66
HttP42859 Gnb2-203ENSMUST00000111023 1471 ntTSL 5 BASIC19.18■□□□□ 0.66
HttP42859 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC19.18■□□□□ 0.66
HttP42859 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HttP42859 Pard6a-204ENSMUST00000212352 1234 ntTSL 2 BASIC19.18■□□□□ 0.66
HttP42859 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HttP42859 Gpr180-201ENSMUST00000022728 1875 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HttP42859 Ppil3-204ENSMUST00000117069 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Mir770-201ENSMUST00000103252 94 ntBASIC19.17■□□□□ 0.66
HttP42859 Gm4974-201ENSMUST00000209974 875 ntBASIC19.17■□□□□ 0.66
HttP42859 AC159301.1-201ENSMUST00000225130 1182 ntBASIC19.17■□□□□ 0.66
HttP42859 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Actl10-201ENSMUST00000104928 1501 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
HttP42859 Actl10-202ENSMUST00000226583 1501 ntBASIC19.17■□□□□ 0.66
HttP42859 Raver2-202ENSMUST00000106955 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Rad23a-202ENSMUST00000109761 1842 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Rnf26-206ENSMUST00000216511 2257 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HttP42859 Syne4-208ENSMUST00000176304 1006 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HttP42859 Fam213b-201ENSMUST00000030935 883 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Eif5a-203ENSMUST00000071026 1286 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HttP42859 Pantr1-210ENSMUST00000185599 343 ntTSL 3 BASIC19.16■□□□□ 0.66
HttP42859 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
HttP42859 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HttP42859 Gm37805-201ENSMUST00000192612 1094 ntBASIC19.16■□□□□ 0.66
HttP42859 Fzd8-201ENSMUST00000041080 3346 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
HttP42859 Calb2-201ENSMUST00000003754 1431 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HttP42859 F420014N23Rik-202ENSMUST00000219079 659 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 76,532 protein–RNA pairs in 47.1 ms