Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Blcap-201ENSMUST00000088494 2108 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 Gm16054-201ENSMUST00000139469 1819 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 Fam213a-201ENSMUST00000022317 1537 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
Msx1P13297 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
Msx1P13297 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC16.94■□□□□ 0.3
Msx1P13297 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Gm9194-201ENSMUST00000220749 1447 ntBASIC16.94■□□□□ 0.3
Msx1P13297 Akp3-201ENSMUST00000044878 1680 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Chmp6-201ENSMUST00000026434 1557 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
Msx1P13297 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC16.94■□□□□ 0.3
Msx1P13297 Arrb2-204ENSMUST00000102564 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Phf20l1-201ENSMUST00000048188 6670 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
Msx1P13297 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Mir5122-201ENSMUST00000175004 89 ntBASIC16.93■□□□□ 0.3
Msx1P13297 AC163280.1-201ENSMUST00000228194 1100 ntBASIC16.93■□□□□ 0.3
Msx1P13297 Gm15823-201ENSMUST00000064305 670 ntBASIC16.93■□□□□ 0.3
Msx1P13297 Fbxo47-201ENSMUST00000093939 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Trim37-201ENSMUST00000041282 5632 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
Msx1P13297 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
Msx1P13297 Dtwd2-201ENSMUST00000025383 2476 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Ndel1-203ENSMUST00000108672 1653 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Hpn-202ENSMUST00000108102 1830 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Gm6433-201ENSMUST00000118634 875 ntBASIC16.92■□□□□ 0.3
Msx1P13297 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Fkbp11-201ENSMUST00000003445 731 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Pstk-201ENSMUST00000075610 1135 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Lrrc75b-201ENSMUST00000051129 4601 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Msx1P13297 Itsn1-206ENSMUST00000113999 5393 ntTSL 5 BASIC16.92■□□□□ 0.3
Msx1P13297 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Prkaca-201ENSMUST00000005606 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Gm43672-201ENSMUST00000199072 1731 ntBASIC16.91■□□□□ 0.3
Msx1P13297 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Espn-208ENSMUST00000105654 1566 ntTSL 5 BASIC16.91■□□□□ 0.3
Msx1P13297 Dock9-202ENSMUST00000100299 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC16.91■□□□□ 0.3
Msx1P13297 Phox2b-202ENSMUST00000174251 1177 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
Msx1P13297 Cdca4-202ENSMUST00000220899 1994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Lrrc43-201ENSMUST00000094327 2046 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
Msx1P13297 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Snrnp35-202ENSMUST00000111453 1181 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
Msx1P13297 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Gm10231-201ENSMUST00000181584 441 ntBASIC16.9■□□□□ 0.3
Msx1P13297 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
Msx1P13297 Gm10175-202ENSMUST00000208752 441 ntBASIC16.9■□□□□ 0.3
Msx1P13297 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC16.9■□□□□ 0.3
Msx1P13297 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Dmtn-210ENSMUST00000228824 2377 ntBASIC16.9■□□□□ 0.3
Msx1P13297 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC16.9■□□□□ 0.3
Msx1P13297 4930447C04Rik-201ENSMUST00000044000 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Inppl1-202ENSMUST00000165052 4730 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Ghrhr-202ENSMUST00000203241 1328 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Msx1P13297 Trim67-201ENSMUST00000041106 5694 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
Retrieved 100 of 76,532 protein–RNA pairs in 33.2 ms