Protein–RNA interactions for Protein: P11087

Col1a1, Collagen alpha-1(I) chain, mousemouse

Predictions only

Length 1,453 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col1a1P11087 Olfr317-201ENSMUST00000075607 1128 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
Col1a1P11087 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Fam166b-201ENSMUST00000052829 1349 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Rsu1-201ENSMUST00000028059 1546 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Ncmap-205ENSMUST00000105860 2000 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Spdya-202ENSMUST00000124001 1247 ntTSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Il3ra-202ENSMUST00000223589 738 ntBASIC21■□□□□ 0.95
Col1a1P11087 Pigf-201ENSMUST00000024957 988 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Col1a1P11087 Map4k3-202ENSMUST00000112389 4231 ntAPPRIS ALT1 TSL 5 BASIC20.99■□□□□ 0.95
Col1a1P11087 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col1a1P11087 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col1a1P11087 Renbp-202ENSMUST00000116578 1418 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col1a1P11087 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col1a1P11087 Ppp1r2-202ENSMUST00000115233 958 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col1a1P11087 Cenps-207ENSMUST00000177408 689 ntTSL 2 BASIC20.99■□□□□ 0.95
Col1a1P11087 4930505N22Rik-201ENSMUST00000181820 945 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col1a1P11087 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Col1a1P11087 Ppp3ca-202ENSMUST00000070198 4758 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Col1a1P11087 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col1a1P11087 Tfap4-201ENSMUST00000005862 2113 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col1a1P11087 Map3k15-201ENSMUST00000033665 4348 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Col1a1P11087 Mrps12-204ENSMUST00000171183 883 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Col1a1P11087 Gm43791-201ENSMUST00000202914 468 ntTSL 5 BASIC20.98■□□□□ 0.95
Col1a1P11087 Zfp324-204ENSMUST00000210619 447 ntTSL 3 BASIC20.98■□□□□ 0.95
Col1a1P11087 Etfb-201ENSMUST00000004729 893 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Col1a1P11087 Gm7461-201ENSMUST00000058918 827 ntBASIC20.98■□□□□ 0.95
Col1a1P11087 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC20.98■□□□□ 0.95
Col1a1P11087 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Col1a1P11087 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
Col1a1P11087 Jag2-201ENSMUST00000075827 5106 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 4930401G09Rik-201ENSMUST00000139500 637 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 Nt5c1a-201ENSMUST00000068262 1220 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Col1a1P11087 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC20.97■□□□□ 0.95
Col1a1P11087 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Col1a1P11087 Zfp943-202ENSMUST00000153985 1598 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 AC121961.1-201ENSMUST00000218594 1779 ntBASIC20.96■□□□□ 0.95
Col1a1P11087 Gm26620-201ENSMUST00000180542 817 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
Col1a1P11087 Zfp524-203ENSMUST00000209030 1128 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
Col1a1P11087 Gm7213-201ENSMUST00000215977 950 ntBASIC20.96■□□□□ 0.95
Col1a1P11087 Ndufb8-201ENSMUST00000026222 680 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Fgf23-201ENSMUST00000000186 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Sco1-202ENSMUST00000108690 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Col1a1P11087 Gm27357-201ENSMUST00000183754 135 ntBASIC20.95■□□□□ 0.94
Col1a1P11087 Gm38973-201ENSMUST00000206810 878 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Pom121-201ENSMUST00000111171 5580 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Hoxa10-201ENSMUST00000121043 1436 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
Col1a1P11087 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Plac9a-201ENSMUST00000052286 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Mrpl9-201ENSMUST00000029786 1612 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Bcs1l-202ENSMUST00000113732 1679 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
Col1a1P11087 Eva1c-201ENSMUST00000037539 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Sapcd2-202ENSMUST00000100323 1761 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
Col1a1P11087 Cacnb1-204ENSMUST00000107561 1778 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC20.95■□□□□ 0.94
Col1a1P11087 Leng1-201ENSMUST00000019878 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Col1a1P11087 Gm37025-201ENSMUST00000195159 829 ntBASIC20.94■□□□□ 0.94
Col1a1P11087 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC20.94■□□□□ 0.94
Col1a1P11087 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col1a1P11087 Bnip2-203ENSMUST00000117450 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col1a1P11087 Clk4-201ENSMUST00000093132 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col1a1P11087 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col1a1P11087 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.94■□□□□ 0.94
Col1a1P11087 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col1a1P11087 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
Col1a1P11087 Thumpd2-201ENSMUST00000025093 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col1a1P11087 Tra2a-204ENSMUST00000204189 1777 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col1a1P11087 Mrpl37-201ENSMUST00000030365 1498 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Col1a1P11087 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Col1a1P11087 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC20.94■□□□□ 0.94
Col1a1P11087 Cd83-201ENSMUST00000015540 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Foxp1-220ENSMUST00000176565 3727 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.93■□□□□ 0.94
Col1a1P11087 Espn-203ENSMUST00000070018 1618 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Exoc5-206ENSMUST00000161504 2582 ntTSL 5 BASIC20.93■□□□□ 0.94
Col1a1P11087 Gm7856-201ENSMUST00000117514 1493 ntBASIC20.93■□□□□ 0.94
Col1a1P11087 B3galnt2-207ENSMUST00000221974 2439 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Col1a1P11087 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Col1a1P11087 Hes6-201ENSMUST00000086851 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 40.6 ms