Protein–RNA interactions for Protein: O88689

Pcdha4, Protocadherin alpha-4, mousemouse

Predictions only

Length 947 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha4O88689 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdha4O88689 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdha4O88689 Gm42545-201ENSMUST00000202755 922 ntBASIC19.97■□□□□ 0.79
Pcdha4O88689 Kcmf1-206ENSMUST00000206378 544 ntTSL 5 BASIC19.97■□□□□ 0.79
Pcdha4O88689 Gm10812-201ENSMUST00000099864 546 ntBASIC19.97■□□□□ 0.79
Pcdha4O88689 Iqsec1-210ENSMUST00000212100 3500 ntTSL 5 BASIC19.97■□□□□ 0.79
Pcdha4O88689 Slc25a26-201ENSMUST00000061118 1922 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdha4O88689 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdha4O88689 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.97■□□□□ 0.79
Pcdha4O88689 Gm43042-201ENSMUST00000198676 1820 ntTSL 5 BASIC19.97■□□□□ 0.79
Pcdha4O88689 Dmrt2-201ENSMUST00000053068 2347 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdha4O88689 Kcnb1-201ENSMUST00000059826 4015 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdha4O88689 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha4O88689 Frmd3-202ENSMUST00000098006 2205 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha4O88689 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Pcdha4O88689 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha4O88689 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC19.96■□□□□ 0.79
Pcdha4O88689 Hmces-201ENSMUST00000032141 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha4O88689 Tmem196-201ENSMUST00000058644 1678 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
Pcdha4O88689 Mmp28-204ENSMUST00000119346 1517 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha4O88689 Ppm1h-201ENSMUST00000067918 6369 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha4O88689 Krt19-201ENSMUST00000007317 1576 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 Lrrc57-204ENSMUST00000102499 1961 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
Pcdha4O88689 Tmem80-201ENSMUST00000026578 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 Gm45141-201ENSMUST00000206502 1888 ntBASIC19.95■□□□□ 0.78
Pcdha4O88689 Gm10418-201ENSMUST00000100943 576 ntBASIC19.95■□□□□ 0.78
Pcdha4O88689 Lypla1-208ENSMUST00000150971 877 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 AC166341.7-201ENSMUST00000221698 126 ntBASIC19.95■□□□□ 0.78
Pcdha4O88689 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 Bcat2-201ENSMUST00000033098 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 Tsks-201ENSMUST00000080233 1806 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha4O88689 4930432B10Rik-202ENSMUST00000181330 1612 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha4O88689 Olfr94-203ENSMUST00000222190 1611 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
Pcdha4O88689 Nmnat3-202ENSMUST00000112937 1898 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha4O88689 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha4O88689 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC19.94■□□□□ 0.78
Pcdha4O88689 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC19.94■□□□□ 0.78
Pcdha4O88689 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha4O88689 Gm11643-201ENSMUST00000119578 864 ntBASIC19.94■□□□□ 0.78
Pcdha4O88689 Gm36736-201ENSMUST00000206060 646 ntTSL 3 BASIC19.94■□□□□ 0.78
Pcdha4O88689 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha4O88689 Mtcp1-201ENSMUST00000033542 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha4O88689 3110043O21Rik-203ENSMUST00000108127 3193 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha4O88689 Sdcbp-201ENSMUST00000029912 2745 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha4O88689 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Gm5953-201ENSMUST00000220644 2616 ntBASIC19.93■□□□□ 0.78
Pcdha4O88689 9530080O11Rik-201ENSMUST00000137239 1475 ntTSL 2 BASIC19.93■□□□□ 0.78
Pcdha4O88689 Ccnd3-215ENSMUST00000183044 2064 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Abcd4-210ENSMUST00000223107 2410 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Gm37292-201ENSMUST00000192062 758 ntBASIC19.93■□□□□ 0.78
Pcdha4O88689 Htra3-202ENSMUST00000114233 1901 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Crlf3-201ENSMUST00000061283 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Sos1-201ENSMUST00000068714 8919 ntAPPRIS P1 TSL 2 BASIC19.93■□□□□ 0.78
Pcdha4O88689 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Fxyd6-203ENSMUST00000217381 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha4O88689 Hrh3-202ENSMUST00000163215 1401 ntTSL 5 BASIC19.93■□□□□ 0.78
Pcdha4O88689 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Ntng1-207ENSMUST00000131027 1485 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Ntng1-209ENSMUST00000138344 1452 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Hnrnph3-201ENSMUST00000020263 2213 ntAPPRIS P3 TSL 5 BASIC19.92■□□□□ 0.78
Pcdha4O88689 H2-Q7-202ENSMUST00000076256 1523 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
Pcdha4O88689 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Negr1-201ENSMUST00000041425 2095 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 A230050P20Rik-201ENSMUST00000043911 1683 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC19.92■□□□□ 0.78
Pcdha4O88689 Gm3764-202ENSMUST00000180582 440 ntTSL 5 BASIC19.92■□□□□ 0.78
Pcdha4O88689 Gm43183-201ENSMUST00000200632 547 ntBASIC19.92■□□□□ 0.78
Pcdha4O88689 Myl6-206ENSMUST00000218127 691 ntAPPRIS ALT1 TSL 2 BASIC19.92■□□□□ 0.78
Pcdha4O88689 AC154649.1-201ENSMUST00000227392 384 ntBASIC19.92■□□□□ 0.78
Pcdha4O88689 Ccdc107-201ENSMUST00000030181 817 ntAPPRIS P2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Mbd6-202ENSMUST00000119078 4287 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Gpr137-201ENSMUST00000025909 1717 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Rnpc3-203ENSMUST00000106536 1839 ntAPPRIS P3 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha4O88689 Slc25a39-202ENSMUST00000107098 1606 ntAPPRIS ALT1 TSL 5 BASIC19.91■□□□□ 0.78
Pcdha4O88689 Rasgrp2-224ENSMUST00000167240 2192 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Pcdha4O88689 Tob1-201ENSMUST00000041589 2288 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC19.91■□□□□ 0.78
Pcdha4O88689 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC19.91■□□□□ 0.78
Pcdha4O88689 Aldh1a3-204ENSMUST00000174215 1066 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 Gm29791-202ENSMUST00000207888 369 ntBASIC19.91■□□□□ 0.78
Pcdha4O88689 Ttpal-202ENSMUST00000109408 1999 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.91■□□□□ 0.78
Pcdha4O88689 Epc2-201ENSMUST00000092123 4697 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 Efcab11-201ENSMUST00000046485 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 Artn-202ENSMUST00000097913 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 Ispd-207ENSMUST00000223205 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha4O88689 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Retrieved 100 of 76,532 protein–RNA pairs in 68 ms