Protein–RNA interactions for Protein: O88551

Cldn1, Claudin-1, mousemouse

Predictions only

Length 211 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cldn1O88551 Mgst3-201ENSMUST00000028005 1097 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Tm2d1-201ENSMUST00000030292 952 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Actrt3-201ENSMUST00000047630 1961 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Myrip-201ENSMUST00000048121 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Clic1-201ENSMUST00000007257 1466 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cldn1O88551 Gm10461-201ENSMUST00000202073 4786 ntBASIC15.29■□□□□ 0.04
Cldn1O88551 Chst2-201ENSMUST00000036267 7328 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Ube2k-201ENSMUST00000142407 4893 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Gm7712-202ENSMUST00000222331 1510 ntBASIC15.29■□□□□ 0.04
Cldn1O88551 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Gclm-201ENSMUST00000029769 5589 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 1300014J16Rik-201ENSMUST00000219015 1337 ntBASIC15.29■□□□□ 0.04
Cldn1O88551 Gfra4-202ENSMUST00000066958 783 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC15.29■□□□□ 0.04
Cldn1O88551 Fzd2-201ENSMUST00000057893 3663 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
Cldn1O88551 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Col27a1-201ENSMUST00000036300 7612 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cldn1O88551 Gm37711-201ENSMUST00000194907 1749 ntTSL 5 BASIC15.29■□□□□ 0.04
Cldn1O88551 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 H2-Q6-201ENSMUST00000113879 981 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Cldn1O88551 Lyzl4-202ENSMUST00000120918 959 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 4931413I07Rik-201ENSMUST00000173637 764 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC15.28■□□□□ 0.04
Cldn1O88551 Fxyd1-208ENSMUST00000205807 539 ntTSL 3 BASIC15.28■□□□□ 0.04
Cldn1O88551 Timm23-208ENSMUST00000226683 750 ntBASIC15.28■□□□□ 0.04
Cldn1O88551 Mrpl21-201ENSMUST00000025743 802 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 Gm10273-201ENSMUST00000092511 1126 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Cldn1O88551 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC15.28■□□□□ 0.04
Cldn1O88551 Cyp2u1-203ENSMUST00000200236 1716 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC15.28■□□□□ 0.04
Cldn1O88551 Pitx2-201ENSMUST00000029657 1680 ntTSL 5 BASIC15.28■□□□□ 0.04
Cldn1O88551 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cldn1O88551 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 Gpr137-203ENSMUST00000099776 1569 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cldn1O88551 Nuak1-201ENSMUST00000020220 5558 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cldn1O88551 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cldn1O88551 Gm45560-201ENSMUST00000211492 1472 ntBASIC15.27■□□□□ 0.04
Cldn1O88551 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC15.27■□□□□ 0.04
Cldn1O88551 Ccdc59-201ENSMUST00000020049 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cldn1O88551 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Cldn1O88551 Rhoa-201ENSMUST00000007959 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cldn1O88551 Gm15723-201ENSMUST00000139331 600 ntTSL 3 BASIC15.27■□□□□ 0.04
Cldn1O88551 Gm28793-201ENSMUST00000190845 413 ntTSL 5 BASIC15.27■□□□□ 0.04
Cldn1O88551 Gm37292-201ENSMUST00000192062 758 ntBASIC15.27■□□□□ 0.04
Cldn1O88551 Samd13-205ENSMUST00000197989 591 ntTSL 5 BASIC15.27■□□□□ 0.04
Cldn1O88551 AC159205.6-201ENSMUST00000224935 887 ntBASIC15.27■□□□□ 0.04
Cldn1O88551 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC15.27■□□□□ 0.04
Cldn1O88551 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cldn1O88551 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cldn1O88551 Atxn7-201ENSMUST00000022257 6853 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cldn1O88551 Ubr3-202ENSMUST00000112251 8081 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Cldn1O88551 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC15.27■□□□□ 0.03
Cldn1O88551 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Cldn1O88551 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cldn1O88551 Foxp1-225ENSMUST00000177229 1848 ntAPPRIS ALT2 TSL 5 BASIC15.27■□□□□ 0.03
Cldn1O88551 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Cldn1O88551 Mtss1l-201ENSMUST00000052457 4717 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Trim54-201ENSMUST00000013771 1434 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC15.26■□□□□ 0.03
Cldn1O88551 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Gcgr-201ENSMUST00000026119 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Gm10013-201ENSMUST00000106074 672 ntBASIC15.26■□□□□ 0.03
Cldn1O88551 Epo-203ENSMUST00000111039 706 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Gm6345-202ENSMUST00000180900 204 ntBASIC15.26■□□□□ 0.03
Cldn1O88551 Gm10138-203ENSMUST00000206952 366 ntBASIC15.26■□□□□ 0.03
Cldn1O88551 Bricd5-201ENSMUST00000054946 997 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Zfp783-201ENSMUST00000095946 670 ntBASIC15.26■□□□□ 0.03
Cldn1O88551 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC15.26■□□□□ 0.03
Cldn1O88551 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC15.26■□□□□ 0.03
Cldn1O88551 March8-202ENSMUST00000101032 4611 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Srrm2-209ENSMUST00000190686 8864 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Cldn1O88551 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Rab5a-201ENSMUST00000017975 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC15.26■□□□□ 0.03
Cldn1O88551 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
Cldn1O88551 Tbc1d9-202ENSMUST00000093393 5334 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Galk1-201ENSMUST00000021114 1406 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
Cldn1O88551 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cldn1O88551 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cldn1O88551 Zpbp2-202ENSMUST00000081033 1300 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
Cldn1O88551 Fam213a-202ENSMUST00000118466 1567 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cldn1O88551 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC15.25■□□□□ 0.03
Cldn1O88551 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
Cldn1O88551 Gm15375-201ENSMUST00000119510 849 ntBASIC15.25■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 28.7 ms