Protein–RNA interactions for Protein: O54990

Prom1, Prominin-1, mousemouse

Predictions only

Length 867 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prom1O54990 Prss16-204ENSMUST00000150547 1159 ntTSL 3 BASIC19.77■□□□□ 0.76
Prom1O54990 Utf1-201ENSMUST00000168457 1227 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prom1O54990 Ripply2-201ENSMUST00000058846 503 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prom1O54990 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prom1O54990 4933428P19Rik-201ENSMUST00000199616 1376 ntBASIC19.77■□□□□ 0.76
Prom1O54990 H2-DMa-201ENSMUST00000042121 1555 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Prom1O54990 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC19.77■□□□□ 0.75
Prom1O54990 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.75
Prom1O54990 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC19.77■□□□□ 0.75
Prom1O54990 4930471E19Rik-201ENSMUST00000219022 1514 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Ctsh-201ENSMUST00000034915 1617 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Rab1b-201ENSMUST00000025804 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
Prom1O54990 Gab1-201ENSMUST00000034150 4870 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Prom1O54990 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Gm1673-202ENSMUST00000114382 451 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
Prom1O54990 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Muc2-203ENSMUST00000179227 399 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Gm17484-201ENSMUST00000167899 2322 ntTSL 2 BASIC19.76■□□□□ 0.75
Prom1O54990 Fez2-202ENSMUST00000112487 2020 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Golga7-202ENSMUST00000121783 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Ppp1r21-201ENSMUST00000038551 3141 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Prom1O54990 Mvb12b-201ENSMUST00000041555 4998 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Stk11-201ENSMUST00000003152 2566 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Nxt1-202ENSMUST00000109961 1116 ntAPPRIS P1 TSL 2 BASIC19.75■□□□□ 0.75
Prom1O54990 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Tppp3-201ENSMUST00000014990 1127 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Zfas1-205ENSMUST00000189909 738 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Gm45058-201ENSMUST00000205810 766 ntBASIC19.75■□□□□ 0.75
Prom1O54990 Nxt1-201ENSMUST00000047177 956 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Vsig10-201ENSMUST00000086464 2052 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
Prom1O54990 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Prom1O54990 Ppp1r3g-203ENSMUST00000225537 2389 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
Prom1O54990 Pdlim5-211ENSMUST00000198381 1555 ntAPPRIS ALT2 TSL 5 BASIC19.74■□□□□ 0.75
Prom1O54990 1810043G02Rik-201ENSMUST00000105397 1818 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prom1O54990 Slc9a2-201ENSMUST00000027231 5019 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prom1O54990 Paics-203ENSMUST00000120912 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prom1O54990 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prom1O54990 Cldn18-203ENSMUST00000131922 860 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Prom1O54990 Gm27463-201ENSMUST00000183569 57 ntBASIC19.74■□□□□ 0.75
Prom1O54990 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prom1O54990 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Prom1O54990 Ppp1r1b-204ENSMUST00000137634 1343 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Prom1O54990 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prom1O54990 Gm7856-201ENSMUST00000117514 1493 ntBASIC19.73■□□□□ 0.75
Prom1O54990 Golph3-205ENSMUST00000228671 2842 ntBASIC19.73■□□□□ 0.75
Prom1O54990 Gm10013-201ENSMUST00000106074 672 ntBASIC19.73■□□□□ 0.75
Prom1O54990 Gm13401-201ENSMUST00000117074 291 ntBASIC19.73■□□□□ 0.75
Prom1O54990 Gm13816-201ENSMUST00000152230 715 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
Prom1O54990 Gm6345-202ENSMUST00000180900 204 ntBASIC19.73■□□□□ 0.75
Prom1O54990 2310001K24Rik-202ENSMUST00000186760 740 ntTSL 2 BASIC19.73■□□□□ 0.75
Prom1O54990 Anapc13-203ENSMUST00000188398 727 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Prom1O54990 Flywch2-201ENSMUST00000024704 694 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prom1O54990 Fam167b-201ENSMUST00000052835 913 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prom1O54990 Setd3-201ENSMUST00000071095 2755 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prom1O54990 Agbl4-205ENSMUST00000106591 1406 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prom1O54990 Fam181a-201ENSMUST00000179363 1406 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
Prom1O54990 Wnt10b-202ENSMUST00000166022 1594 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prom1O54990 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
Prom1O54990 Aup1-201ENSMUST00000092618 1769 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Srsf1-201ENSMUST00000079866 2948 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Bsg-202ENSMUST00000105381 1240 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 AA467197-202ENSMUST00000110512 751 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Mdfi-203ENSMUST00000113280 1281 ntTSL 5 BASIC19.72■□□□□ 0.75
Prom1O54990 Tmem60-201ENSMUST00000115259 1147 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Gm15138-201ENSMUST00000151778 379 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Mir5130-201ENSMUST00000175160 84 ntBASIC19.72■□□□□ 0.75
Prom1O54990 Gm6728-201ENSMUST00000178117 1065 ntBASIC19.72■□□□□ 0.75
Prom1O54990 1700007L15Rik-201ENSMUST00000180923 737 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Gm4974-201ENSMUST00000209974 875 ntBASIC19.72■□□□□ 0.75
Prom1O54990 4930465K10Rik-201ENSMUST00000056675 1238 ntBASIC19.72■□□□□ 0.75
Prom1O54990 Trim58-201ENSMUST00000075084 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Atg16l2-202ENSMUST00000122116 2083 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC19.72■□□□□ 0.75
Prom1O54990 Acvr1c-204ENSMUST00000112608 1497 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
Prom1O54990 Arf1-202ENSMUST00000163300 1991 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Lyl1-201ENSMUST00000037165 1800 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Chtop-203ENSMUST00000076639 1842 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
Prom1O54990 Krcc1-203ENSMUST00000204436 1687 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prom1O54990 Gm9774-202ENSMUST00000192538 1392 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Prom1O54990 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
Prom1O54990 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC19.71■□□□□ 0.75
Prom1O54990 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
Prom1O54990 0610012G03Rik-201ENSMUST00000202722 1445 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
Prom1O54990 Mafg-202ENSMUST00000106180 732 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Prom1O54990 Mafg-204ENSMUST00000106182 1104 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 18.1 ms